LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g0187	ATGGAACAACACCAGGTGTGTGCGCAATGCACCCACAACTGTGCATTGCTTCACGGAAAAGGGAAAACCTCATCATTCCCTCCTTCCTCTTTCTTCAAGATCATGCTTGGTGACGACTTCTCCACAGTTTTGCATCTTCCTCCTAAGTTTAGTCGTACTGCATCAGACTTGGTTGATAAGAAAATTGTTCTCTCGGATTCAAGTGGGCACCAATGGAATGCAAAAATATCAAATGTTGATGGTTCTCTCGCTCTTGAGGAAGGATGGAATAAATTTTCGTTGGATCATAGACTTGAAGTTGGAGATTTTGTGGTATTCTTTTATGATAATGAATCGCATTTCTATGTTCAAATTTATGATAGATCTGGGTGCGAAAGGCGTGAATTTTCTAAGAAAAGAAATAAGAATAAAAGAAGTAGGGACAGGAGTGGCTCTCCTGATAGAAATGCTACGTTGGTTGGACAAGGTCCAAATGCCTCAGTTGTTTCCAAGCCTGATGCGCAAAAAATGGATAGCCAGAAGGGGGAGGCTGATGTAGGAAGAGCACAAAACAACATGGAGAATATTTCAAAACATGATAAGAGCAATGGGAGTGCCCAATCTTTGTGCAGAGAAGAATACCGTGAAGACCCACATCACATGACAAGCCAAGATGACTGTGCTGTCAATGGGACTGGGAAAATTAGAACTGGAGATTCAAAAGTTTCTCATGTTGATTATGGATCCTGTGTGCATCGAAATGATGCAACTGAATGCATATGTCTTAAGTTAAAAGAGACATTGGATAGTGGTGGAGCTACTTCAAAAGCACCTGAAGTTGAATTTTCTGGGAAAAAAAAAACTCCTATAGATACAGACAGGAGTGCATATAACAAGACTTCTACTTTGAAACTCGAAGAAAACAGAAAGAACAATTTTGTTAAATCCAATGGGGAAGTTCAAGAGTGCCAATTTGATAAGGGCTTAGAAAGTGATCAGGTGGTTAAATCCAAGAGAAAAAACGATTTGGATATTGATGGACTTAACACCAAACAGAGGTGCAATGGCATACCAAATATCTCGGATGATAGTCACAATGGTGAAATGTCAAAAGGGATTAAGCAAGAGGTTGTGTCTGCAGGCATGACTCGCAATGGGGCCAGTTTCAAGGGCAGATTCAGTGCAGAAGGTGAAAAAATGTCTAAAAGGATTAAAAAAGAGCCTCATGTGGACATGACTCCCAATGTGCCCAGTTCCAACTATGAGTTTGGAGCAACAGGTTCATCAAAGGTTATCAAGAAGGAATTGATTCAGGATCCTGACATGATTGATCAAGATGATAATGATGATGATGATGATGATCATGGTCATGACATTCAAACATCAGCCTCCGTCTCCTGCATGGTGCCTGCGGATAATGATCATTTTCTTGAATTGCCGACACGCTTGCCTTATTCTCGCAGGCTTAGAGCAAAAATGGAGAGGATGTTGGTGTTCCTAAGGAATCCAATGGATCCAAGGAGGAATTTGTGGCCGGTCCTTTACCATGAACATTCAAGGTTTAAAATTCTGACAACAGGATGGTCACAATTTCGCAGAGCTAATAATATTCAACCAGCAGATATGTGTACTTTTGAGCTTGAGGCGGAGTCTGAACGCATCTTTAATGTAGATATAGTCCACAACTGA	1668	0.4083	MEQHQVCAQCTHNCALLHGKGKTSSFPPSSFFKIMLGDDFSTVLHLPPKFSRTASDLVDKKIVLSDSSGHQWNAKISNVDGSLALEEGWNKFSLDHRLEVGDFVVFFYDNESHFYVQIYDRSGCERREFSKKRNKNKRSRDRSGSPDRNATLVGQGPNASVVSKPDAQKMDSQKGEADVGRAQNNMENISKHDKSNGSAQSLCREEYREDPHHMTSQDDCAVNGTGKIRTGDSKVSHVDYGSCVHRNDATECICLKLKETLDSGGATSKAPEVEFSGKKKTPIDTDRSAYNKTSTLKLEENRKNNFVKSNGEVQECQFDKGLESDQVVKSKRKNDLDIDGLNTKQRCNGIPNISDDSHNGEMSKGIKQEVVSAGMTRNGASFKGRFSAEGEKMSKRIKKEPHVDMTPNVPSSNYEFGATGSSKVIKKELIQDPDMIDQDDNDDDDDDHGHDIQTSASVSCMVPADNDHFLELPTRLPYSRRLRAKMERMLVFLRNPMDPRRNLWPVLYHEHSRFKILTTGWSQFRRANNIQPADMCTFELEAESERIFNVDIVHN*	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g0187	555	MobiDBLite	consensus disorder prediction	265	286	-	-
	Dod09g0187	555	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	8	553	IPR044837	-
	Dod09g0187	555	ProSiteProfiles	B3 DNA-binding domain profile.	455	555	IPR003340	GO:0003677
	Dod09g0187	555	CDD	B3_DNA	30	120	IPR003340	GO:0003677
	Dod09g0187	555	Gene3D	-	455	555	IPR015300	-
	Dod09g0187	555	ProSiteProfiles	B3 DNA-binding domain profile.	29	122	IPR003340	GO:0003677
	Dod09g0187	555	Pfam	B3 DNA binding domain	31	121	IPR003340	GO:0003677
	Dod09g0187	555	Pfam	B3 DNA binding domain	497	552	IPR003340	GO:0003677
	Dod09g0187	555	SUPERFAMILY	DNA-binding pseudobarrel domain	464	549	IPR015300	-
	Dod09g0187	555	SUPERFAMILY	DNA-binding pseudobarrel domain	26	124	IPR015300	-
	Dod09g0187	555	MobiDBLite	consensus disorder prediction	434	453	-	-
	Dod09g0187	555	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1	8	553	-	-
	Dod09g0187	555	MobiDBLite	consensus disorder prediction	127	178	-	-
	Dod09g0187	555	MobiDBLite	consensus disorder prediction	146	167	-	-
	Dod09g0187	555	CDD	B3_DNA	461	552	IPR003340	GO:0003677
	Dod09g0187	555	SMART	B3_2	457	551	IPR003340	GO:0003677
	Dod09g0187	555	SMART	B3_2	31	122	IPR003340	GO:0003677
	Dod09g0187	555	Gene3D	-	25	124	IPR015300	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g0187	31	123	REM Transcription Factor Family	AT3G53310	33.333	1.39e-12	66.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Dod09g0187		B3	1.4e-14	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g0187	-		-	adu:107478866	383.259