Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0126 ATGGACTGGAATTTCAAAGCATCTTCTTGGGATATGAGTGTTGTGGATGAGGCCACTACCTTACCAAACATAGAAACAACAATGGATGATGAGTCAAGCAGATTTGGGGTGTACAGAACCAAAGGGCATTTTTCTGTTGACTTGAAGCTGGGTCAGGTTGGGAATTCTGGCTCTGATGACTATGTAGTGCCCAAGTCCAAAGATGTTGCTGCTGCTAGAGTCTCCAAGATGGCATCATCCTCTCCTTCAGGGCCATATAAAAGAGCTCGACCTGCTAGCAGTGGAACCCTGGCAGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGCACTTGCAGAGATTATCATAGGCGCCATAAAGTCTGTGAACAACATTCCAAGACCCCGGAGGTCACAATTGGTGGCCTGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCGCTAGATCAATTTGATGAAGGAAAAAGAAGCTGCAGAAAACGCTTAGATGGACACAACCGAAGGAGAAGAAAGCCTCAGCCCGATCCTGTCCCGCGAACTGGTAGTTTTTTGTCCAGTTACCAAGGAAACCAGTTGCTACCGTTCTCAAGTCCACATGTGTATTCTTCCAATGCCATGGTGAGCCCTGCATGGAGCGGCGGGCTCGTTGCTTCATGTTCTGATGCTAGGCTGCAAAACCACAAGCAGCACCAACAAGTGCATTTGGTTGATAAACGAGACTTCTTCCTTGGATCTTCTCCATCCAGCAGCTATAAAGAGCAGCAGCAGCAGCAGCAGCAACTAGCATTCTTACACGGAGATGACAATGCCACAACAATATTCAACAACAACCAAACTCTTCTCAGGACCAACCCCTTGTCAGAGAGTGATCATCATATGGTGAGAACCAGTAATAAGATGTTGTGTGATAGCCTTGTAGCAACTTCAATACACGACCCTCCTCGTGCTCTCTCTCTTCTGTCATCATCACAGAGGCACACACATGATGGGAATGGTTTGAGCCAAATGGTGCAGCAGCAGCAGCAACTGCCTCACACGATGTGCCTCATGCAGCCTTTAGGCCTGAGCCTGCATGATAACAATAACAGCTTGGAGTCCATGGACAGGGTGGTGTTGGTCCCCAATGGCAATGGAAGTGACCATTGTTCCTCAGTGTATGACAACATGGGTGGTTCTGATGGATCACAGGGCAATGAAGCCCCTCATCAACTGTTTCCCTTTCAATGGGAATAG 1242 0.4791 MDWNFKASSWDMSVVDEATTLPNIETTMDDESSRFGVYRTKGHFSVDLKLGQVGNSGSDDYVVPKSKDVAAARVSKMASSSPSGPYKRARPASSGTLAVSCLVDGCNSDLSTCRDYHRRHKVCEQHSKTPEVTIGGLKQRFCQQCSRFHSLDQFDEGKRSCRKRLDGHNRRRRKPQPDPVPRTGSFLSSYQGNQLLPFSSPHVYSSNAMVSPAWSGGLVASCSDARLQNHKQHQQVHLVDKRDFFLGSSPSSSYKEQQQQQQQLAFLHGDDNATTIFNNNQTLLRTNPLSESDHHMVRTSNKMLCDSLVATSIHDPPRALSLLSSSQRHTHDGNGLSQMVQQQQQLPHTMCLMQPLGLSLHDNNNSLESMDRVVLVPNGNGSDHCSSVYDNMGGSDGSQGNEAPHQLFPFQWE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0126 413 Pfam SBP domain 101 174 IPR004333 GO:0003677
Dod09g0126 413 Gene3D - 92 162 IPR036893 GO:0003677|GO:0005634
Dod09g0126 413 ProSiteProfiles Zinc finger SBP-type profile. 98 175 IPR004333 GO:0003677
Dod09g0126 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 17 413 - -
Dod09g0126 413 MobiDBLite consensus disorder prediction 162 186 - -
Dod09g0126 413 SUPERFAMILY SBT domain 99 179 IPR036893 GO:0003677|GO:0005634
Dod09g0126 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 413 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0126 Dod-Chr9 1950093 1955287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0126 1 413 SBP-box Gene Family AT5G50670 37.413 9.98e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod09g0126 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0126 - - gmx:100787407 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod04g2680 04 50784128 50788423 Dod09g0126 09 1950093 1955287 PCT