Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0101 ATGGAAGAGTCGTCGGCGGCAGCAGAGGCAGACCCACTGGCCCAGTCCCTCAGCCTCGTCTCATCCCTCCTAAACGACGAGCTCCCGACGGTGCAGCACTTGAAGGGCAAGTGGTCACTCGCCCGAGTCAAACTCAGCCTCCTCCAAACCCACCTCACCCATTTCTCCTCCGAGTCCGAGTCCGAGTCCGAGCCCACACTGAACGACGCCCTCTCCCTCCACCTCCTCACTTCCATCCTCCACACCCTAAACGACGCCCTCTCCCTCGCACGACACTGCCAATCCCCTCACCTCCCAAACGGCAAGCTCAAGACCCAAAACGACCTCGACTCCCTCCTCTCCCTCCTCCACCGCCACCTCTCCGACTGCGACGTCCTCCTCAAGAGCGGCTTCCTCCACAACCAATACGACGCCGCCGCCGCCCTTCCCTCCAAACGATCCGAATTGTGCAACCTCATAACCCGACTCCAAATCGGGTCGCCCGAGTCCAGAACCTCCGCAATGGACTCGCTCTTAACCCTCCTCCAACAAGACGACAAGAACGTCTCCATGGCGGTGGCGCAGGGAGTGGTTCCCGTGCTCGCGCGCCTACTCGATTCCCCCTCCTCCTCCTCCGCCAACGCCGCCGACACCAAGGAGAAAACCATCGCGGCGATCTCCTTGGTCGCCGCCGTGGACGCCGGGAGGCACGTCTTGATCGCGGAGGGGCTCCTCCTCCTCAACCACCTCCTCCGAGTCCTCGACTCGGGAAGCGGCTTCGCCATCGAAAGAGCTTGCGTCGCGCTTCAAGCTCTCAGCTCAAACAAAGAAAACGCCATGGCGATTGGCTCCAGAGGAGGAATCTCCTCCCTCTTGGAGATTTGCCAGTCCGGCACGCCAGGCACGCAAGCCTCCGCCGCAGGGGTTCTCAGGAATCTGGCGAGATCCTCCGAAATCAGGGAGAATTTCGTGGAGGAAAATGCCCTAGTTGTGCTCCTCGGGCTTGCTTCTTCTGGAACCGTTCTGGCGCAAGAGAACGCGATCGGATGCTTATCGAATTTGGTTTCAAATTGCGAGAATCTGAGAATTTCGGTGGTGAAGGAAGGTGGTGTTCGGTGCTTGAAGAATTTCTGGGACTCTTCGTCGCATTCGATGAAGAGCCTCGAGGTTGCGGTTGAGATGTTAGCGAACTTGGCTTCGAGTTCCCCAATCGCGGAGGTTCTGGTTTCGGAAGGTTTCGTTGAGAGGCTCGTTTCGGTGCTGAATTCTGGGGTTCTCGCGTTGAGAATTTCGGGTGCTAGAGCGGTTTATGCTCTGGGGCTAAACAGTGTGAAGGCGAGGAAGGATTTCGGTGAGTGCGGGTGCATTGCGGTGCTGGTAAGGATGCTGGATGGGAAGGGCGTGGAGGAGAAAGAGGCCTCGGCGAAGGCGTTGTCGGTGCTGCTGCTTCATTCCGGTAACAGGAAGGTTTTCAGGAAGGAGGAGAGGGGGGTGGTGAGTGCGGTTCATTTGTTGAACCCTTCGGTGCAGGACCTGGACAAGAGGTACCCGGTTTCGTTGCTGGGGTGTTTGGTTCAGTCCAAGAGCTGCAGGAAGCAGATGGTGGCGGCTGGTGCTTGTGTATATACGCAGAAGCTTGTTGAGATGGATGTTGAAGGGTCCAAGAAGCTCTTGGACAGCCTCGGTCGTGGTAAGATTTGGGGTGTTTTTGCAAGGCCCTAG 1701 0.5814 MEESSAAAEADPLAQSLSLVSSLLNDELPTVQHLKGKWSLARVKLSLLQTHLTHFSSESESESEPTLNDALSLHLLTSILHTLNDALSLARHCQSPHLPNGKLKTQNDLDSLLSLLHRHLSDCDVLLKSGFLHNQYDAAAALPSKRSELCNLITRLQIGSPESRTSAMDSLLTLLQQDDKNVSMAVAQGVVPVLARLLDSPSSSSANAADTKEKTIAAISLVAAVDAGRHVLIAEGLLLLNHLLRVLDSGSGFAIERACVALQALSSNKENAMAIGSRGGISSLLEICQSGTPGTQASAAGVLRNLARSSEIRENFVEENALVVLLGLASSGTVLAQENAIGCLSNLVSNCENLRISVVKEGGVRCLKNFWDSSSHSMKSLEVAVEMLANLASSSPIAEVLVSEGFVERLVSVLNSGVLALRISGARAVYALGLNSVKARKDFGECGCIAVLVRMLDGKGVEEKEASAKALSVLLLHSGNRKVFRKEERGVVSAVHLLNPSVQDLDKRYPVSLLGCLVQSKSCRKQMVAAGACVYTQKLVEMDVEGSKKLLDSLGRGKIWGVFARP* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0101 566 Gene3D - 148 376 IPR011989 -
Dod09g0101 566 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 279 321 IPR000225 GO:0005515
Dod09g0101 566 SUPERFAMILY ARM repeat 151 504 IPR016024 -
Dod09g0101 566 Gene3D - 377 551 IPR011989 -
Dod09g0101 566 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 9 564 - -
Dod09g0101 566 SMART arm_5 309 349 IPR000225 GO:0005515
Dod09g0101 566 SMART arm_5 436 476 IPR000225 GO:0005515
Dod09g0101 566 SMART arm_5 351 393 IPR000225 GO:0005515
Dod09g0101 566 SMART arm_5 178 224 IPR000225 GO:0005515
Dod09g0101 566 SMART arm_5 268 308 IPR000225 GO:0005515
Dod09g0101 566 SMART arm_5 394 434 IPR000225 GO:0005515
Dod09g0101 566 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0101 Dod-Chr9 1400825 1402677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0101 210 471 U-box Gene Family AT2G23140 27.652 1.95e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0101 - - gmx:100794077 686.797