Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0098 ATGGCAGCTTTTTCGTACCAATACCACCCTTTTCTTGTTGACTCAGCATTCTTGTCCAATATAAACATTGGCCCTCCCTCTCATAACCTTCACCACCTTCATCATCATGAGACCTCTTTTAATGATGTGATCACAAACAATCATCATCAGCAAGAGGCTGTAGTAAGCTCTCTTGATCAAAGCTCCAAGGTTTCCGTCAGTGACAATGAGCCCTCTGTGACCAAAAACAACATTAGCCCTCAGTCTTCCATGGTAGTGGACAAGCTTGAAACCGGTGAGCAGGTGACTCAGAAGGTGAGTACTCCTATGGAGAGGAAGAGGAGAACTAGGCATGGATCTTCCCTCAGTAACCCACAATCTAAGCATACAACTGATGAAGAGAGAAACAAGAAAATGAGGAAGAGCAGTGGTGGGGTGAAAGAAGAGGACAAGCCAAAAGCAGAGAAGAAGGATCAGAAGAAAGGTACTGAAGAGCCCCCAACAGGCTACATCCACGTCAGAGCAAGAAGGGGTCAAGCAACGGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGGATGAAGATGTTGCAGCGGCTTGTGCCAGGCTGTGATAAGGTGACTGGAAAGGCCCTTATGTTGGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTAGAGTTCTTGTCAATGAAGCTTGCATCCGTGAATCCAATGTTCTATGAATTGGCAGCAGACTTAGACACCCTCTTGGTTAGACCAGAGAAATTGAATAGCATAACACCACCGTCACCATCACCACCACCACCACCAATACCTGTGCCACATTGCAGCAGCCCCAACCAAGGCACAACTTTTGCTGATGCAACCACCATGATCCCCACCACCACTACCATCTTTTCCACTACTAATGACTACCTTCTGGATAGTTCAGCTTCAGTTTTTCTCCAAGGGCAGAGATCATCAAATTTATTCTCTGCGGATACCGGTAGTCATTTCTGGGAGGCAGAAGACCAACGACAAAAGTTTCTTCATCCATATGGATTCATCAACAACCTATGTTCCTTTCATTGA 1074 0.4507 MAAFSYQYHPFLVDSAFLSNINIGPPSHNLHHLHHHETSFNDVITNNHHQQEAVVSSLDQSSKVSVSDNEPSVTKNNISPQSSMVVDKLETGEQVTQKVSTPMERKRRTRHGSSLSNPQSKHTTDEERNKKMRKSSGGVKEEDKPKAEKKDQKKGTEEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKMLQRLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASVNPMFYELAADLDTLLVRPEKLNSITPPSPSPPPPPIPVPHCSSPNQGTTFADATTMIPTTTTIFSTTNDYLLDSSASVFLQGQRSSNLFSADTGSHFWEAEDQRQKFLHPYGFINNLCSFH* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0098 357 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 357 - -
Dod09g0098 357 MobiDBLite consensus disorder prediction 58 180 - -
Dod09g0098 357 CDD bHLH_AtBPE_like 162 238 - -
Dod09g0098 357 MobiDBLite consensus disorder prediction 121 180 - -
Dod09g0098 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 357 IPR024097 GO:0006355
Dod09g0098 357 SMART finulus 178 228 IPR011598 GO:0046983
Dod09g0098 357 MobiDBLite consensus disorder prediction 58 99 - -
Dod09g0098 357 Pfam Helix-loop-helix DNA-binding domain 176 223 IPR011598 GO:0046983
Dod09g0098 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 242 IPR036638 GO:0046983
Dod09g0098 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 222 IPR011598 GO:0046983
Dod09g0098 357 Gene3D - 169 243 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0098 Dod-Chr9 1346967 1349962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0098 118 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.846 3.54e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g0098 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0098 - - gmx:100806696 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0098 09 1346967 1349962 Dod09g0098 09 1346967 1349962 ECH