Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0090 ATGATGTCGTGGACAATGGATGACAGAGAAGACCAAGACAGAGATTCATGGAACAGAAACTCGAAACCACCAAACACAGAAAGGAACACCTCTTCTAGTTTTGTTGAACACAACAGCAGGGACGAGTTGAGTTCCCTGTGCGCTTTCAAACCCAGCATGATGGAGGTTGTTGTTGATGATGAGTGGTACATGTCCAACAACACCATCAGCATCCATAACCACCAAGACATGATGATGAATATGAGGGACATGTCTTTCTCACCCACAAACTTCGGTAACCCTTCAGATAACGACCTTCTACTCCACCACCCTGTTGACTCTTCCTCTTCTTGCTCTCCCTCACCTTCCATGTTCACCAACCTTGGTGTTGGTGGTGCTGACCCTTCTTCATCTCAGGTGCAGTACTTTCTCCCTCCTCCTTCAAACCCCAAAGCCACCACCACCTTGCTTCTCACCAACACCAACAACAACCCTTTTGATTGTGAAGTTGGGTTCCTTGAGCCTCAAGGTTCCACCTCTTCACCAGTGCTCCAAAGAGGTCCCTCTCCTTCTTCTTCTACCCTTTTGGGTGGCTTGATCCCTGACTTGGCCTCAAACAACCACTTAATTACCCTTCCCAACTTAGCCCCATCAGATCATAATTCACATTCAGCACCCACCAAGATTGTGAGTGTGACCCAGTTTCCACCACAAAACAGCACTGGGTTTGCAGGGTTTCAGAAGTTTGATGATGAAGGTTCTGGAAAGTCACCACTGTTTTTGAACAGGTCCAAGATTTTGAGGCCACTTGAGTCTTTGCCTCCATCTGGGGCACAGCCAACACTGTTTCAGAAGAGAGCAGCACTCAGGAAAAACAAGGGATCAGAACAAGGTGGTGTTAGTGTTGGTGCTGGTGTGAGTAGGGGAAAGTGTGAAGCTGTTGGGGAAGGGAGTGATAAGAAGAGGAGGGTGATGATGATGATGAGTAGTAGTGGGGATGAGATGGAAGATGCAAGCTTTGATGGGTCAGCATTAAACTATGATTCTGATGACTTGGTTGAGAGTAACAACAACAGCAGCAGCAAGGTGGTGGTGGATGAGAACAATGCCAAGAATAATTGTGGGAACAGCTCCAATGGCAACAACAGCACAGTCACTGGTGTGGATCAGAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCTGAACGCCGCCGCCGGAAGAAGCTCAATGATAGGCTGTATATGCTGAGGTCCGTTGTTCCGAAGATTAGCAAAATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGACCTTCACAATGAACTGGAGTCTACATCTGGTGGCTCTTCACTCACACCTGTCTCAAGCTTCCATCCTCTGACACCTACTCCACCTGCACTGCCCAGCCGTATTAAAGAAGAAATATGCCCCAGCTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTCCGGTTGCGGGAAGGGCGGGCTGTAATCATCCACATGTTTTGTGGCCGCAAACCCGGTCTCTTGCTCTCAACCATGAGGGCTTTGGACAACCTTGGTTTAGACATTCAGCAGGCTGTCATCAGCTGTTTCAATGGATTTGCCATGGATATTTTCAGAGCTGAGCAATGCAATGAAGGTCAGGATGTCCATCCGGAGCAAATCAAGGCATCACTCTTGGATACAGCTGGCTACGCTGGCATGATCTAA 1743 0.4831 MMSWTMDDREDQDRDSWNRNSKPPNTERNTSSSFVEHNSRDELSSLCAFKPSMMEVVVDDEWYMSNNTISIHNHQDMMMNMRDMSFSPTNFGNPSDNDLLLHHPVDSSSSCSPSPSMFTNLGVGGADPSSSQVQYFLPPPSNPKATTTLLLTNTNNNPFDCEVGFLEPQGSTSSPVLQRGPSPSSSTLLGGLIPDLASNNHLITLPNLAPSDHNSHSAPTKIVSVTQFPPQNSTGFAGFQKFDDEGSGKSPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNKGSEQGGVSVGAGVSRGKCEAVGEGSDKKRRVMMMMSSSGDEMEDASFDGSALNYDSDDLVESNNNSSSKVVVDENNAKNNCGNSSNGNNSTVTGVDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTSGGSSLTPVSSFHPLTPTPPALPSRIKEEICPSSLPSPNGQPARVEVRLREGRAVIIHMFCGRKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCNEGQDVHPEQIKASLLDTAGYAGMI* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0090 580 CDD ACT_UUR-ACR-like 508 568 - -
Dod09g0090 580 MobiDBLite consensus disorder prediction 22 37 - -
Dod09g0090 580 MobiDBLite consensus disorder prediction 361 382 - -
Dod09g0090 580 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 438 IPR011598 GO:0046983
Dod09g0090 580 MobiDBLite consensus disorder prediction 1 37 - -
Dod09g0090 580 Coils Coil 428 452 - -
Dod09g0090 580 Pfam Helix-loop-helix DNA-binding domain 396 438 IPR011598 GO:0046983
Dod09g0090 580 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 392 456 IPR036638 GO:0046983
Dod09g0090 580 CDD bHLH_AtAMS_like 392 457 - -
Dod09g0090 580 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 118 580 - -
Dod09g0090 580 MobiDBLite consensus disorder prediction 1 21 - -
Dod09g0090 580 Gene3D - 382 453 IPR036638 GO:0046983
Dod09g0090 580 PANTHER BHLH TRANSCRIPTIONAL FACTOR 118 580 - -
Dod09g0090 580 SMART finulus 395 444 IPR011598 GO:0046983
Dod09g0090 580 MobiDBLite consensus disorder prediction 361 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0090 Dod-Chr9 1248599 1252667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0090 49 553 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 47.793 3.56e-111 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod09g0090 HLH 2.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0090 - - vra:106778861 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0090 09 1248599 1252667 Dod09g0090 09 1248599 1252667 ECH
Dod04g2643 04 50322179 50325033 Dod09g0090 09 1248599 1252667 PCT