Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0089 ATGACATCATCGGAGGCTACGGACGCTCAGAATGTTCATTCTTCCTCCACAGCTAAAGAGGCTGAAGCTGCACTTTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTCCCCAGAGAAGGAGAACTAGTCTACTATTTCCCTCAGGGACATATAGAGCAGGTGGAGGCGTCAACGAATCAGGTGGCGGACCAACACATGCCTGTGTACGATCTTCGTCCCCAGATCCTATGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAGGTCACCTTACTTCCGGAGCAGAATCAAGATGAGAAAGCGGAGGAGAAAGAGCCGCCTGCGCCACCACCGCCGCGGTTCCACGTGCATTCGTTCTGCAAGACTCTGACTGCATCTGATACAAGTACTCATGGTGGGTTTTCTGTGCTGAGACGGCATGCCGATGAGTGCCTTCCTCCCCTGGACATGTCAAAGCAGCCACCTACCCAGGAATTGGTGGCTAAGGATTTGCATGGGAACGAATGGCGATTCAGACATATTTTCAGGGGTCAACCCCGCAGACACTTGCTTCAAAGTGGCTGGAGTGTTTTTGTGAGCTCCAAGAGGCTAGTTGCTGGGGATGCATTTATATTTCTAAGGTTTGTTTCTTCCTGCTTGGGTTTAGATTGCATTTATTTGTTGGTTCTTTGGTTTTCCATTTGGAGTGGTTTTAATTTAGTGATTTTCAGAGGTGAGAATGGGGAGCTTCGTGTCGGTGTCAGGCGAGCAATGAGACAGCAAGGCAATGTTCCGTCCTCGGTTATCTCTAGTCACAGCATGCATCTTGGGGTACTTGCAACTGCTTGGCATGCCGTCTTGACTGGGACCATATTCACTGTTTATTACAAGCCTAGAACCAGTCCCTCTGAATTCATAGTTCCATATGATCAATATATGGAATCTCTCAAAAATAATTATTCCATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGCTGACACCAAAAGGTGGCCTAAATCCAGATGGAGATGCCTCAAGGTGAGATGGGACGAAACATCTAACATACCGCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTATGAATCCTCTCCCAATGCCCAGGGCTAAAAGGCCTAGATCTAACACAGTTCAATCATCCCCAGATTCTTCTGTTCATATTCGAGAAGCATCATCTAAAGTAAGCGTAGACCCTTTACCCCCAGATGGGTTCTCAAGGGTCTTGCAAGGTCAAGAATTTTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCTGACACTGCTGAGAAGTCTGTTGTTTGGCCACCTGCTGTAGATGATGATAAGGTTGATGTTGTTTCTACTCCTCGGAGGTTTGGGTCAGAGACCTGGACGTCAATGGGAAGGCATGACACAGCTTATTCAGATCTTCTTTCAGGCTTTGGGGCCAGTGGAGATCCTTCACATCCATCCTTGGTTGATCAGATGGGTCCTGTAGCCTATCCTGCTAGAAAGCATTCATTGGATCATGAAGGCAAACTTAATGTGCGTCATCCATGGCCTGTAATTCCCTCTAGCCTATCACTAAACCTCTTGGATTCTAATGTCAAAGGTTCGCCACGTGGTCTTGAAACACCTTACCAAGCTCGAGGGAATTTGAGGTACAGTGCATTTGGTGAATATCATGTGCCTCACGGTCATAAAGCTGAGCTTCCACATGGAAACATGATGCCACCCCCACCCCCAACTCAATACGAGAGTCCCCGTTCAAGAGAGCTTGTGTCCAAACCAATGCCAGTGAAAACTTGTGAGACTGTGAAACCAAAGGATGGTGACTGTATGCTATTTGGCATCTCACTTATCAGTAGCCCCAGTGCACCAGAGTCTTCTGCATCACAAAAAAATGTGACTAGTGAGCCAGCTGGGCAAATGCATTTTACGTCACGCCAACAGCGTACTTCCGAAAATGATCAGAAATCAGAACATTCAAAGGGCTCCAAGCCAGCAGATGGAACTGTTGTTGATGACCATGAAAAGCCATTACAAACTTCTCAGTCCAAACCACCCAGTGGTTCTGCTAGGAGTTGCACGAAAGTTCACAAGAAGGGGATTGCACTTGGTAGGTCAGTTGATCTTACGAAGTACAGCAACTATGATCAGTTGGTGGCTGAATTGGATCGGCTGTTTGAATTTGGAGGTGAATTAATGTCAACGAGAAAGCATTGGCTTATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTTGGCGATGACCCTTGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCGAAAGAGGAGATTCAGAAAATGAGCCCAGGTACCTTGAGTTCGAAAAATGAAGAGATTCAGTCAGCTAGTGAAGGCGCAGACGCAAAAGAAGTTAAAAGTCAGCTGCATCAGAAGTTAAACTTGGAAAATGACACCCAATAA 2559 0.4689 MTSSEATDAQNVHSSSTAKEAEAALYRELWHACAGPLVTVPREGELVYYFPQGHIEQVEASTNQVADQHMPVYDLRPQILCRVINVQLKAEPDTDEVFAQVTLLPEQNQDEKAEEKEPPAPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRFVSSCLGLDCIYLLVLWFSIWSGFNLVIFRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTIFTVYYKPRTSPSEFIVPYDQYMESLKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADTKRWPKSRWRCLKVRWDETSNIPRPERVSPWKIEPALAPPAMNPLPMPRAKRPRSNTVQSSPDSSVHIREASSKVSVDPLPPDGFSRVLQGQEFSTLRGNFAESNESDTAEKSVVWPPAVDDDKVDVVSTPRRFGSETWTSMGRHDTAYSDLLSGFGASGDPSHPSLVDQMGPVAYPARKHSLDHEGKLNVRHPWPVIPSSLSLNLLDSNVKGSPRGLETPYQARGNLRYSAFGEYHVPHGHKAELPHGNMMPPPPPTQYESPRSRELVSKPMPVKTCETVKPKDGDCMLFGISLISSPSAPESSASQKNVTSEPAGQMHFTSRQQRTSENDQKSEHSKGSKPADGTVVDDHEKPLQTSQSKPPSGSARSCTKVHKKGIALGRSVDLTKYSNYDQLVAELDRLFEFGGELMSTRKHWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEEIQSASEGADAKEVKSQLHQKLNLENDTQ* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0089 852 MobiDBLite consensus disorder prediction 409 427 - -
Dod09g0089 852 Gene3D - 721 814 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 813 852 - -
Dod09g0089 852 Gene3D - 128 263 IPR015300 -
Dod09g0089 852 PANTHER AUXIN RESPONSE FACTOR 2 14 832 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 813 827 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 683 713 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 601 625 - -
Dod09g0089 852 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 832 IPR044835 GO:0003677|GO:0006355|GO:0009725
Dod09g0089 852 SUPERFAMILY DNA-binding pseudobarrel domain 127 228 IPR015300 -
Dod09g0089 852 Gene3D - 324 394 - -
Dod09g0089 852 Pfam AUX/IAA family 718 812 IPR033389 -
Dod09g0089 852 ProSiteProfiles PB1 domain profile. 725 807 IPR000270 GO:0005515
Dod09g0089 852 ProSiteProfiles B3 DNA-binding domain profile. 131 238 IPR003340 GO:0003677
Dod09g0089 852 MobiDBLite consensus disorder prediction 655 727 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 655 682 - -
Dod09g0089 852 SUPERFAMILY CAD & PB1 domains 725 802 - -
Dod09g0089 852 MobiDBLite consensus disorder prediction 828 843 - -
Dod09g0089 852 Pfam B3 DNA binding domain 131 218 IPR003340 GO:0003677
Dod09g0089 852 MobiDBLite consensus disorder prediction 391 443 - -
Dod09g0089 852 SMART B3_2 131 240 IPR003340 GO:0003677
Dod09g0089 852 Pfam Auxin response factor 287 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Dod09g0089 852 CDD B3_DNA 129 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0089 Dod-Chr9 1242362 1248002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0089 18 839 B3 DNA Binding Superfamily AT5G62000 63.345 0.0 1037
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Dod09g0089 AUX_IAA 1.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0089 - - aip:107612759 1318.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0089 09 1242362 1248002 Dod09g0089 09 1242362 1248002 ECH
Dod04g2642 04 50288079 50322005 Dod09g0089 09 1242362 1248002 PCT
Dod09g0089 09 1242362 1248002 Dod05g1497 05 39867497 39870137 PCT