Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0088 ATGATTAAAGGGAAAATAACCCTTGGTTTCCTCAGGGAAGGGCTCGAAGAGGCATACGATGGAGACATCACATTTGCAAGTGCCCTTGAAAATTTTGGAGGGGGCCATACTGATCCTCTATTTGTAACCTTGGGAGGACCGGTTATGACCAAATTCACTGTTGCGTTGAGAGAAATCAGTACATTCAAGGAGCTTCTTCGGTCAGAGGTAGTGGAGCACATGCTGAATGACCGGTTACTGAACATTCTAAATGTCGAAATCCTCGATGTCAAGGAAGCTCGAAGGCGTTTTGACAAAGCTTCCCTTGCATATGACCAGGCTCGTGAGAAATTTACATCATTGAGAAAAAGTACTAAAGCGGACATCGCCATTGTCATAGAGGAGGAATTGCACAATGCAAGAAACACATTTGAAGGAGCTCGTTTCAATCTGGTTAGTGCTCTTCACAATATTGAGGCCAAGAAGAGATTTGAGTTTCTGGAGGCTATCACAGGAGTAATGGATGCTCATCTTCGATATTTTCGACAGGTATATGACCTAATTTCCTTTCTTGTATTTGCCATGTTTCAGGTTTTGGCTTATGCGCAAAAAGCAAGAGAAAGTCACAATGAGGAGCAGATTACTCTATGTGAAAGAATGGTAGAGTACAAGAAACTTGCTCATCAAGAAAGCAAGTTGTCCTTGAAGGGCCCTTACGGTTCTCCCAGTGGAGACTCTCTGCAACCATTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTCACAGAATCTGTTATAAATGGAAAGGTTCAAATCATCCGAGAAGGGTATCTCTCAAAACGATCCTCCAATCTGAGGGGTCACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCACGGGATGCTTTACTACTACCGTAAACTGTGGACAGGGTTGCAAGTAAGTGGTGGCAATCAAGTATCATCACAGAGGAATATAGGCACTGATAGTTCTACTGGCATTCTGAGTCGGTTGCTTTCTTCAAATAACCATGCAGTTGTCAATGATGAAAGGGCCGGTGCACGTCATACAGTGACCCTGCTGACATCAACAATCAAGATTGATGATGAACAATCAGATTTAAGATTCTGCTTCAGAATCGTTTCACCAGCAAAGATGTATACATTACAGGCGGAAAATGCCCTGGACCAGATGGATTGGATGGAAAAGATTACTGGAGTCATTGCCTCCTTGTTGAGTCTACAGACACTGGGAATGCCTATCTTAGATTACCCAGAAAGCAGTGACTGTGACTCTTCCAGCAAGACTGATTCATTACAAGGTTCCCTTGATGATGATCTAGCAATAAGTGCAGATTTTGCATCCAAGATTAACATCACCCCTAATAGGTCACCTAAAGACTTGCTGCGGAGTAGGTTCAGTTTAAAAAGTGAAAAGCCAATTGATGTTCTTAGAAGGGTTAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCTTTAAACCTTGGCATCCTTGTATGCATTGAATGTTCTGGTGTTCATCGTAATCTTGGTGTGCATGTATCAAAAGTAAGATCACTCACACTTGATGTGAGAGTATGGGATTCATCTGTCTTAACCATGTTTCAGTCACTGGGAAATCTCTTTGCAAACTCAGTTTGGGAGGAGCTATTGCATTCAACAAGTACTTCGCTAACTGATGATACTCCTCATGGTTCATCAATGGGCATCAAAAACAAGTTATTTCATGCAAGAAAACCAGCACATGATGATCCCATTTCGCTAAAGGAGAGGTTCATTCATGCAAAGTATTCTGAGAAAGTCTTTGTTCGCCGGATGCCACAGAACCACCGTCTCCTTTCGGTGGTGCAACAGGTGTGGGAAAGCATCTTTGCCAACGACAAGAAAGCAGTGTACCGGCACATTGTCGAGTCCGATGTGGATGTCAATACTATCAATGGGAAAGCATTAGATGGAGATTCTTTCAACATTCCTTCCTCAAGTAATTCAAGCATGTCATCTCAAAGTAATAGTCCACTAATGGAGGACATACAAGATGGTTCTAGTGTGCTTCACCTGGCATGCCTAACGTGTGATGCTGGAATGGTGGAGTTGCTCTTACAATATGGTGCAGATATAAATGCTCTTGATTCAAGGGGTCGGACACCAATACATTACTGCATTATGAGAGGGAAAATTGCAGCTGCAAAAGTGCTTATTGCAAGAGGGGCCAATCCACATGTAGTAGATAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAACCCAGCAATGAAATTGTAGCTCTCTTAACAACAAGCAGATGA 2325 0.4258 MIKGKITLGFLREGLEEAYDGDITFASALENFGGGHTDPLFVTLGGPVMTKFTVALREISTFKELLRSEVVEHMLNDRLLNILNVEILDVKEARRRFDKASLAYDQAREKFTSLRKSTKADIAIVIEEELHNARNTFEGARFNLVSALHNIEAKKRFEFLEAITGVMDAHLRYFRQVYDLISFLVFAMFQVLAYAQKARESHNEEQITLCERMVEYKKLAHQESKLSLKGPYGSPSGDSLQPFSRISNEVVDAVTESVINGKVQIIREGYLSKRSSNLRGHWKRRYFVLDSHGMLYYYRKLWTGLQVSGGNQVSSQRNIGTDSSTGILSRLLSSNNHAVVNDERAGARHTVTLLTSTIKIDDEQSDLRFCFRIVSPAKMYTLQAENALDQMDWMEKITGVIASLLSLQTLGMPILDYPESSDCDSSSKTDSLQGSLDDDLAISADFASKINITPNRSPKDLLRSRFSLKSEKPIDVLRRVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHVSKVRSLTLDVRVWDSSVLTMFQSLGNLFANSVWEELLHSTSTSLTDDTPHGSSMGIKNKLFHARKPAHDDPISLKERFIHAKYSEKVFVRRMPQNHRLLSVVQQVWESIFANDKKAVYRHIVESDVDVNTINGKALDGDSFNIPSSSNSSMSSQSNSPLMEDIQDGSSVLHLACLTCDAGMVELLLQYGADINALDSRGRTPIHYCIMRGKIAAAKVLIARGANPHVVDKEGNTPLKLASEPSNEIVALLTTSR* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0088 774 SMART 5bar 1 190 IPR004148 GO:0005515|GO:0005737
Dod09g0088 774 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Dod09g0088 774 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Dod09g0088 774 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Dod09g0088 774 ProSiteProfiles PH domain profile. 264 402 IPR001849 -
Dod09g0088 774 Gene3D - 257 409 IPR011993 -
Dod09g0088 774 Pfam Putative GTPase activating protein for Arf 474 610 IPR001164 GO:0005096
Dod09g0088 774 ProSiteProfiles Ankyrin repeat region circular profile. 718 750 - -
Dod09g0088 774 SUPERFAMILY ArfGap/RecO-like zinc finger 471 612 IPR037278 -
Dod09g0088 774 SUPERFAMILY BAR/IMD domain-like 16 287 IPR027267 -
Dod09g0088 774 CDD BAR_SFC_plant 12 184 IPR035670 -
Dod09g0088 774 Gene3D Arfaptin homology (AH) domain/BAR domain 11 222 IPR027267 -
Dod09g0088 774 ProSiteProfiles Ankyrin repeat profile. 718 750 IPR002110 GO:0005515
Dod09g0088 774 SUPERFAMILY PH domain-like 265 425 - -
Dod09g0088 774 CDD PH_ACAP 267 406 - -
Dod09g0088 774 Pfam PH domain 266 401 IPR001849 -
Dod09g0088 774 SMART PH_update 265 404 IPR001849 -
Dod09g0088 774 CDD ArfGap 474 603 - -
Dod09g0088 774 Pfam BAR domain of APPL family 47 205 - -
Dod09g0088 774 SMART arf_gap_3 471 616 IPR001164 GO:0005096
Dod09g0088 774 SMART ANK_2a 718 747 IPR002110 GO:0005515
Dod09g0088 774 SMART ANK_2a 685 714 IPR002110 GO:0005515
Dod09g0088 774 ProSiteProfiles Ankyrin repeat profile. 685 717 IPR002110 GO:0005515
Dod09g0088 774 Gene3D Arf GTPase activating protein 458 616 IPR038508 -
Dod09g0088 774 PANTHER CENTAURIN/ARF 12 771 IPR045258 GO:0005096
Dod09g0088 774 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 12 771 - -
Dod09g0088 774 Pfam Ankyrin repeats (3 copies) 690 770 IPR002110 GO:0005515
Dod09g0088 774 SUPERFAMILY Ankyrin repeat 684 770 IPR036770 -
Dod09g0088 774 Gene3D - 627 774 IPR036770 -
Dod09g0088 774 Coils Coil 90 110 - -
Dod09g0088 774 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 616 IPR001164 GO:0005096
Dod09g0088 774 ProSiteProfiles Ankyrin repeat region circular profile. 685 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0088 Dod-Chr9 1208107 1216261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0088 472 610 C2H2 Transcription Factor Family AT4G21160 39.041 1.98e-22 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0088 K12489 - gmx:100797073 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0088 09 1208107 1216261 Dod09g0088 09 1208107 1216261 ECH
Dod04g2641 04 50278047 50287010 Dod09g0088 09 1208107 1216261 PCT