Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0083 ATGGACCAGAGGGGCGTATCTGCCTCATCTCATTTTTTTGATGATATTTCCTTTCCTTCTGAGAGGAATGGTGGATTACGGAGGCCAAAATCCATTCGTGACCTACACCCACAAGGAAAGAATGAAATTGCAGCATCACCTGGCAGCATTTTGAATGCATCATCACCTCTTGGAATGAATTCAAAAAAAGGCTTGCCCATGTCACAGTCTAGTTTATCTGGGGAAATTACAGAAAACCTGCATTTTGGTGGAGAAGGCACTATGGATGTGCTGAAGGATTCCAAGGAATTATCTAATTATCATCCAAGATCGTGGTCTAATTTGCGTATGCATCCAGCTTCTAGCTCATATGGTTTAATCGGGAACAAGATTGTCACCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCGAGCTCGCTGTCTGAGATATTTAGCCGAAAGTTGAAGTTATATGGGAATGATGTTCTGCCTGATCAGCCTGTTACTGTTGGTTCCCTTCCTGAGGAAGAACCTTTCAAATCTCTTGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAGGATGATCTGTTTTCTGGTGTCACTGATGAGTTTGGAAGCAGTGTTCAAGCCAGAACTAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGAGGAGGCATGGAATTGGAAGGAGATGAGCATATAGCTTCAGGAAAAAGAACCAGTTTCATGGAAGGAGATCCTGGTTACTTTGGATCCAAAGGAAAACTTCCTTTTGGTGAACAATCGTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTAGAAGACTCTGAACTAAAGGCTCTCTTTGAGCAATACGGAGATATCCGTACCATTTATACTGCCTGCAAGCATCGTGGGTTTGTTATGATTTCTTATTATGATCTAAGGGCGGCACAGAATGCAATGAAAGCACTTCAAAACAAGTCACTGAGGTCTAGGAAGCTTGATATACATTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGCCATGGTACTTTGATGATATCTGGCCTTGATTCATCTGTTTTGAATGATGAACTTAAACACATTTTTGGATTTTATGGAGAAATTAAAGATATCTATGAATCTCCAGAACTGAATCATACCAAGTTTATCGAGTTTTATGATGTGCGAGCTGCAGAAGCTTCTGTTGGTGCATTGAACAGGATCTGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGATTGCAACATGTCTGATGCAGCAGTCGCAGAAGGGACAAGATGAGCCTGATTTTGGCCATAATCTTAATGATAACTTATTATTAAGACAGAAGGCCACATTATCTTCTGGAGCAACTGCATCTGGTGGCAGCTTGGAGAGTGGATATAATCAAGGTTTTCAGTCTGCAAAAAGGCTACCTCTGAATGCTTTTGTTGATAATACATTCTTTCCTGTGAATTCTAGCATTCACAAGACAGGAAGAGGGACATCTGGTGGAAAAGTGTCTGGAGTTTATGAGTCCACTAATGTTGATGCAATGAAATTTGAATCTATTCCGAGGTTCCATCCTCATTCTTTACCTGAGTTTCATGATAGTTTAGCTAATGGTAGTCCTTACACCTTGTCAAGCACCATTAGCAACATGGCCGCCAATATTGGTACTGGATCGACAGAAGTGTCTGACAGCAGGCATATTCAGGGAATAGGTTCACCTGGGAACCTAGCAGAATTTAATGCAGTAGGAAATGGGGGCCGCCCACAACAGGGACTTTATCATATGTGGAACAGTTCCAACATCCGTCAGCAACCTCCATCAAATGCCATGCTTTGGCAGAAAAAACCATCCTTTATTAATGGTGCTTGTGCTCCAGGTCTTCCACAGATGCCCAGCTTTCCTAGAACACCACCTCATGTGCTGAGAGCATCACAAATAGATCACCATGTGGGATCAGCACCAGTTGTTACGGCGTCGCCGTGGGAAAGACAACATTCTTACTTAGGAGAGTCTCCTGAAGCTTCTGGTTTTCGAATGGGCTCTCTAGGAAGTGCAGGTTTTCATGGTAACTGGCAGTTGCATCCTCCAGAGTTTTCTTCTCGCAACATGTTTCCTCATGTTGGTGGGAGTGGTACTGAATTGGCATCCAGTGCTGGCCAGGGTTCTCCTAAGCACTTGTCACATTTTTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGACTCTACAAATGAACGAATGAGAAGCCTCTATCACCGTAGAAGTGAGGCAAACACTAACAATGCCGATAAAAAACAATATGAGCTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACGACGCTCATGATAAAAAATATTCCAAACAAGTATACCTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGAGGAACTTATGATTTTCTGTATTTGCCTATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGCTCAGATTATTCCGTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGCGAAAAGGTAGCCGTACTCGCATATGCTCGAATTCAAGGAAAAGCTGCTCTGATTGCTCATTTCCAAAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCAATTCTCTTCCACACAGATGGCCCAAATGCTGGAGATCCGGAACCTTTCCCCTTGGGTAACAACATTAGAACGAGGCCTGGAAAATCTCGCTCGAATGGTAATGAGGAGAATCGCAGCCAAGGGAGTTCTTCGACTGTGGCAAACGGAGAGGAATCTGCCAATGGAATTGAGTCTTCATTGAGTTCATCAAGAAACTCTGACTGA 2901 0.4274 MDQRGVSASSHFFDDISFPSERNGGLRRPKSIRDLHPQGKNEIAASPGSILNASSPLGMNSKKGLPMSQSSLSGEITENLHFGGEGTMDVLKDSKELSNYHPRSWSNLRMHPASSSYGLIGNKIVTNAASRESSLFSSSLSEIFSRKLKLYGNDVLPDQPVTVGSLPEEEPFKSLEEIEADTIGNLLPDEDDLFSGVTDEFGSSVQARTSDDFEDFDLFSSGGGMELEGDEHIASGKRTSFMEGDPGYFGSKGKLPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNKSLRSRKLDIHYSIPKGNAPEKDIGHGTLMISGLDSSVLNDELKHIFGFYGEIKDIYESPELNHTKFIEFYDVRAAEASVGALNRICIAGKQIKLEPGHPRIATCLMQQSQKGQDEPDFGHNLNDNLLLRQKATLSSGATASGGSLESGYNQGFQSAKRLPLNAFVDNTFFPVNSSIHKTGRGTSGGKVSGVYESTNVDAMKFESIPRFHPHSLPEFHDSLANGSPYTLSSTISNMAANIGTGSTEVSDSRHIQGIGSPGNLAEFNAVGNGGRPQQGLYHMWNSSNIRQQPPSNAMLWQKKPSFINGACAPGLPQMPSFPRTPPHVLRASQIDHHVGSAPVVTASPWERQHSYLGESPEASGFRMGSLGSAGFHGNWQLHPPEFSSRNMFPHVGGSGTELASSAGQGSPKHLSHFFPGRLPMTSMSKFDSTNERMRSLYHRRSEANTNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRSNGNEENRSQGSSSTVANGEESANGIESSLSSSRNSD* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0083 966 Gene3D - 346 440 IPR012677 -
Dod09g0083 966 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 966 - -
Dod09g0083 966 Gene3D - 257 345 IPR012677 -
Dod09g0083 966 SUPERFAMILY RNA-binding domain, RBD 792 877 IPR035979 GO:0003676
Dod09g0083 966 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 966 - -
Dod09g0083 966 SUPERFAMILY RNA-binding domain, RBD 260 419 IPR035979 GO:0003676
Dod09g0083 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 421 IPR000504 GO:0003723
Dod09g0083 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 336 IPR000504 GO:0003723
Dod09g0083 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 415 IPR000504 GO:0003723
Dod09g0083 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 329 IPR000504 GO:0003723
Dod09g0083 966 MobiDBLite consensus disorder prediction 923 966 - -
Dod09g0083 966 CDD RRM3_MEI2_like 793 878 IPR034454 -
Dod09g0083 966 CDD RRM1_MEI2_like 262 337 IPR034453 -
Dod09g0083 966 SMART rrm1_1 349 417 IPR000504 GO:0003723
Dod09g0083 966 SMART rrm1_1 264 332 IPR000504 GO:0003723
Dod09g0083 966 SMART rrm1_1 792 870 IPR000504 GO:0003723
Dod09g0083 966 MobiDBLite consensus disorder prediction 901 966 - -
Dod09g0083 966 MobiDBLite consensus disorder prediction 17 50 - -
Dod09g0083 966 Pfam RNA recognition motif 2 790 886 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0083 Dod-Chr9 1132722 1139363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0083 259 418 Eukaryotic Initiation Factors Gene Family AT1G49760 23.077 2.02e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0083 - - aprc:113865455 1528.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0083 09 1132722 1139363 Dod09g0083 09 1132722 1139363 ECH
Dod04g2638 04 50237888 50247926 Dod09g0083 09 1132722 1139363 PCT