Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0079 ATGTCGGCCATGGTCTGTGCGCTCACTCAAGTCATTGGAGGCACAAACAATGACCCAATTCAGCTTCAGAATGATGACCCCTTGTCCTCAAATTCTCAGTCCAGCACAACCCAGAACAATGAACAGTCTTCCCAACTATCACATCAAGATCAAGGGAGCGCAAGAAGAAGACACTATAGAGGAGTAAGGCAAAGGCCGTGGGGAAAATTTGCAGCGGAGATTCGAGATCCGCAGAAGGCAGCGAGGGTATGGCTTGGAACCTTCGAAACTGCTGAGGCTGCTGCACTTGCATATGATGAAGCAGCTCTCAGATTCAAAGGAAGCAAAGCAAAGCTCAACTTTCCAGAAAGAGTTCAAGGCACAAGCGGATTCGGTTACCTCACAAATCGTGGTCAAGAGTTTCATCATCACCATCATGGAATGTTGTCAAGCACTGGTAGCAGTAATGAACAAGCAGTTTCCCTTGCTCCTCCTCCTCCACACTTTTCTCATCAACAAACATATTCAAGCCCCTCATCATTTCAATATCCTCATCATCAGGTTCTGGCAAGTGCTGGGAGTAATAATAGCTTCAGCTATGATCCTCATATGCATCGTTTCTATGGGAGAGACATGTTTGCTGCTTCTTCTTCTCAGCCTCATCAATTCTTGTCTTCGTCTTCATCGTCTTCTTCTGGACTATCTCACCAAGAGCAAGAGCTTCTGCGATTCTCTATGCAATTTGGAGGTTCTTCTTCTGCTTCTGAGCCGCCTCCCAGGAATTGGATGAATGATGACATGGATGGCAGACGCTGA 795 0.4654 MSAMVCALTQVIGGTNNDPIQLQNDDPLSSNSQSSTTQNNEQSSQLSHQDQGSARRRHYRGVRQRPWGKFAAEIRDPQKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTSGFGYLTNRGQEFHHHHHGMLSSTGSSNEQAVSLAPPPPHFSHQQTYSSPSSFQYPHHQVLASAGSNNSFSYDPHMHRFYGRDMFAASSSQPHQFLSSSSSSSSGLSHQEQELLRFSMQFGGSSSASEPPPRNWMNDDMDGRR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0079 264 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 MobiDBLite consensus disorder prediction 15 50 - -
Dod09g0079 264 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 Pfam AP2 domain 58 107 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 MobiDBLite consensus disorder prediction 137 171 - -
Dod09g0079 264 PANTHER DNA-BINDING DOMAIN 1 241 IPR044808 GO:0003700|GO:0009873
Dod09g0079 264 MobiDBLite consensus disorder prediction 141 171 - -
Dod09g0079 264 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 241 - -
Dod09g0079 264 MobiDBLite consensus disorder prediction 213 252 - -
Dod09g0079 264 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 MobiDBLite consensus disorder prediction 213 264 - -
Dod09g0079 264 Gene3D AP2/ERF domain 57 117 IPR036955 GO:0003700|GO:0006355
Dod09g0079 264 MobiDBLite consensus disorder prediction 15 64 - -
Dod09g0079 264 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Dod09g0079 264 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0079 Dod-Chr9 1094294 1097137 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0079 4 120 AP2-EREBP Transcription Factor Family AT5G13330 62.712 1.12e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod09g0079 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0079 - - gmx:100799190 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1870 01 53471796 53474079 Dod09g0079 09 1094294 1097137 ECH
Dod09g0079 09 1094294 1097137 Dod09g0079 09 1094294 1097137 ECH
Dod04g2635 04 50205711 50207352 Dod09g0079 09 1094294 1097137 PCT