Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0054 ATGGCCAAATCCAACACCTCCACCACCAACACAGCCTTACCACCAAAACCAACATGGGTTCTCCCCTATAGAACACAACATCTCAGAGAACTGTACACTCTAGGAAGAAAACTGGGTCAGGGTCAGTTTGGCACAACATACTTGTGCACACACAAGTCCACTGGCTACACCTATGCCTGCAAGTCAATCCCAAAGAGGAAGCTCTTCTGCAAGGATGACTATGATGATGTGTGGAGGGAGGTTCAGATAATGCACCACTTGTCTGAGCACACCAACGTGGTGAGGATCCATGGAACCTATGAGGACCCCACCAGTGTCCACCTTGTGATGGAGATATGTGAGGGTGGTGAGTTGTTTGACAGGATTGTGAAGAAGGGTCACTACAGTGAGAGGCAGGCTGCAAAGCTGATCAAGACCATTGTTGAGGTTGTGGAGTCTTGTCACTCTCTTGGGGTCATGCATAGGGACCTCAAGCCTGAGAACTTCTTGTTTGATAGTGTTGAGGAGGATGCTAAGCTTAAAGCCACCGATTTTGGCTTGTCTGTTTTTTACAAGCCAGGTGAAACCTTTTCTGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAAATCCTGCGCAAACACTACGGACCTGAATCAGACGTGTGGAGTGCTGGAGTTATTTTGTACATCTTATTAAGTGGGGTGCCTCCATTCTGGGCTGAAACCGAGCAAGGGATCTTCCGGCAGATTTTACTCGGAAGACTTGATTTCCAGTCTGAGCCATGGCCTAGCATTTCCGACAGTGCCAAGGATCTGATTCGGAAAATGCTTGATCGAAATCCAAAAACAAGGCTTACAGCTCATGAAGTACTTTGTCACCCTTGGATTGTTGATGACAACATTGCACCAGATAAGCCTCTTGATTCTGCGGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCGCTGCGTGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATTGGAGGCCTGAAGGAGTTATTCAAGATGATTGATGCTGACAACAGTGGAACCATAACATTTGATGAGCTAAAAGATGGCTTAAGGCGTGTAGGATCTGAACTTATGGAATCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAGTGGGACAATTGACTATGGTGAATTCATTGCTGCTACGGTTCACCTAAATAAGCTGGAAAGAGAGGAAAATCTATTGTCAGCATTCTCCTATTTTGACAAAGATGGCAGTGGTTACATAACCATTGACGAGATTCAACAAGCTTGTAAGGAGTTTGGCTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAAATAGATTATGGGGAATTCGCTGCCATGATGAGAAAGGGCAATGGAGGGATAGGAAGGCGAACCATGAGAAGCACACTCAATTTCAGAGATGCTCTGGGAATCATAGGCAATGGGTCTGGGAAAGTTATTGATGATCAACTTTAG 1518 0.4473 MAKSNTSTTNTALPPKPTWVLPYRTQHLRELYTLGRKLGQGQFGTTYLCTHKSTGYTYACKSIPKRKLFCKDDYDDVWREVQIMHHLSEHTNVVRIHGTYEDPTSVHLVMEICEGGELFDRIVKKGHYSERQAAKLIKTIVEVVESCHSLGVMHRDLKPENFLFDSVEEDAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEILRKHYGPESDVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRLDFQSEPWPSISDSAKDLIRKMLDRNPKTRLTAHEVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDADNSGTITFDELKDGLRRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITIDEIQQACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRSTLNFRDALGIIGNGSGKVIDDQL* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0054 505 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Dod09g0054 505 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Dod09g0054 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Dod09g0054 505 CDD STKc_CAMK 32 289 - -
Dod09g0054 505 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Dod09g0054 505 Gene3D Transferase(Phosphotransferase) domain 1 119 330 - -
Dod09g0054 505 ProSiteProfiles EF-hand calcium-binding domain profile. 443 474 IPR002048 GO:0005509
Dod09g0054 505 Pfam Protein kinase domain 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0054 505 SMART efh_1 373 401 IPR002048 GO:0005509
Dod09g0054 505 SMART efh_1 443 471 IPR002048 GO:0005509
Dod09g0054 505 SMART efh_1 409 437 IPR002048 GO:0005509
Dod09g0054 505 SMART efh_1 337 365 IPR002048 GO:0005509
Dod09g0054 505 SUPERFAMILY EF-hand 329 470 IPR011992 -
Dod09g0054 505 Gene3D Phosphorylase Kinase; domain 1 34 118 - -
Dod09g0054 505 Gene3D - 403 505 - -
Dod09g0054 505 ProSiteProfiles Protein kinase domain profile. 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0054 505 CDD EFh 338 397 IPR002048 GO:0005509
Dod09g0054 505 PANTHER BNAA09G05220D PROTEIN 18 482 - -
Dod09g0054 505 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 482 - -
Dod09g0054 505 ProSitePatterns EF-hand calcium-binding domain. 346 358 IPR018247 -
Dod09g0054 505 SUPERFAMILY Protein kinase-like (PK-like) 8 313 IPR011009 -
Dod09g0054 505 Pfam EF-hand domain pair 338 398 IPR002048 GO:0005509
Dod09g0054 505 Pfam EF-hand domain pair 408 469 IPR002048 GO:0005509
Dod09g0054 505 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Dod09g0054 505 ProSiteProfiles EF-hand calcium-binding domain profile. 333 368 IPR002048 GO:0005509
Dod09g0054 505 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Dod09g0054 505 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Dod09g0054 505 Gene3D - 331 402 - -
Dod09g0054 505 CDD EFh 410 469 IPR002048 GO:0005509
Dod09g0054 505 SMART serkin_6 32 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0054 Dod-Chr9 866770 870840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0054 14 497 EF-hand Containing Proteins AT1G35670 78.074 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Dod09g0054 Pkinase 7e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0054 K13412 - gmx:100790443 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0054 09 866770 870840 Dod09g0054 09 866770 870840 ECH