Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0042 ATGGGCAGATCTCCTTGTTGCGAGAAAGAGCACACAAACAAAGGAGCTTGGACCAAAGAAGAAGATGAGCGCCTCATCAACTACATCAAGGTTCATGGTGAAGGCTGTTGGAGATCTCTTCCCAAAGCTGCTGGCCTGCTGAGATGTGGCAAGAGTTGCAGGCTCAGATGGATAAATTACCTGAGGCCTGATCTCAAGAGAGGCAACTTCACCGAAGAAGAAGATGAGCTCATCATTAGCCTCCACAGCTTACTCGGAAACAAATGGTCTCTGATAGCTGCAAGGTTACCCGGAAGAACAGATAATGAGATCAAGAACTATTGGAACACTCACATCAAGAGAAAACTCTATAGCCGCGGAATCGACCCCCAAACCCACCGGCCACTAAACGCCGCCACCTCAAGCAACAAGAAATCCATGAACAGTGATGATAGCATTCTTACCAACAACAACCATGACATTAACAACAATATTAACAGCAATAGTTTTCAATTGGTGAGTGTTAATAATAATGGCTATGCCGCCAATAATAACACACAGATTATTATTGGAAGCGAATTGGTTTGTGAAGACTCAAATGGCAGCAGTGGCGTTACCACAGATGAAGCCTTATACCCTTCTCATAATCATCATCACCATCACCACCACCACCACCACCACCACCACCACCAGCTACTCAACTTGGATCTTTCCATTGGACTTCCCTCTCAGAACCAAGATCACAAGAAGTTGAAAAAGGAAGAGAAACAACAACAACAACAACAAGAACCACGTGTTTTGTACCAGTGGGGTCAACAAGGTTTGTGCTTGTGTTATGGTCTAGGGTTTCAAAGTAATCAAGCTTGTAGCTGCAAGGCCATTGGTGCTGCTGCTGCGGTTACTGCTACAACTGCCGCAGATAATAACTTGTATAGATTCTGCAGACCCATGAATATTTAG 939 0.4462 MGRSPCCEKEHTNKGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIISLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRPLNAATSSNKKSMNSDDSILTNNNHDINNNINSNSFQLVSVNNNGYAANNNTQIIIGSELVCEDSNGSSGVTTDEALYPSHNHHHHHHHHHHHHHHQLLNLDLSIGLPSQNQDHKKLKKEEKQQQQQQEPRVLYQWGQQGLCLCYGLGFQSNQACSCKAIGAAAAVTATTAADNNLYRFCRPMNI* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0042 312 CDD SANT 69 112 IPR001005 -
Dod09g0042 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod09g0042 312 MobiDBLite consensus disorder prediction 236 256 - -
Dod09g0042 312 CDD SANT 16 61 IPR001005 -
Dod09g0042 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod09g0042 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod09g0042 312 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod09g0042 312 Gene3D - 68 149 - -
Dod09g0042 312 Gene3D - 14 66 - -
Dod09g0042 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod09g0042 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod09g0042 312 MobiDBLite consensus disorder prediction 239 253 - -
Dod09g0042 312 MobiDBLite consensus disorder prediction 209 224 - -
Dod09g0042 312 MobiDBLite consensus disorder prediction 123 142 - -
Dod09g0042 312 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Dod09g0042 312 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 267 - -
Dod09g0042 312 SMART sant 13 63 IPR001005 -
Dod09g0042 312 SMART sant 66 114 IPR001005 -
Dod09g0042 312 MobiDBLite consensus disorder prediction 127 142 - -
Dod09g0042 312 PANTHER TRANSCRIPTION FACTOR MYB7 1 267 - -
Dod09g0042 312 MobiDBLite consensus disorder prediction 199 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0042 Dod-Chr9 698698 700451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0042 1 239 MYB Transcription Factor Family AT2G16720 58.577 3.65e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod09g0042 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0042 K09422 - gmx:778033 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0042 09 698698 700451 Dod09g0042 09 698698 700451 ECH
Dod04g2605 04 49975544 49977350 Dod09g0042 09 698698 700451 PCT