Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0024 ATGGCTGCTTCTCCCCCTCTTCCCATAGCCTACCAGGCAGGGACGAGCGCAGCAGTTCCCGACTGGCTCAACAAAGGGGACAACGCATGGCAAATGGTGTCCGCAACCCTCGTCGGCATCCAAAGCATGCCGGGCCTCGTGATCCTATACGGCAGCATAGTGAAAAAGAAATGGGCCGTTAACTCGGCCTTCATGGCCCTCTACGCCTTCGCCGCGGTCATAATCTGTTGGGTCATATGGGCCTACAAGATGTCTTTCGGGAGGAAGCTTCTGCCGCTGTGGGGAAGGGCGGGCCCTTCCCTGGGGCAGAAGTTCCTCGTCAAGCAGGCCGCGCTGCCTGCAACGACTCACTACTACCACACCGGTGATGTGGAGAGCCCGGAGATCGAGCCCTTTTACCCGATGGCTAGCATGGTGTGGTTCCAGTGCGTGTTCGCGGCGATCACGGTGGTTATTTTGGCGGGGTCGGTGCTGGCGAGGATGAACTTCAAGGCCTGGATGATGTTTGTGCCTCTTTGGGTCACTTTCTCGTACACAGTTGGGGCGTTCAGCTTGTGGGGTGGGGGGTTCTTGTTCCAGTGGGGTGTCATGGACTATTCCGGTGGATACGTTATTCATCTATCTTCCGGTATTGCTGGATTCACTGCTGCTTATTGGGTGGGGCCAAGACTAAAGAAGGACAGGGAGAGATTTCCACCAAACAATGTGTTACTAACGTTGGCAGGAGCAGGTTTGCTATGGCTAGGGTGGGCAGGTTTCAACGGAGGAGATCCTTACTCAGCAAACATAGACTCTTCAATGGCAGTGATCAACACCAACATAAGCGCCGCCACGAGCATGCTTGTGTGGACATGGCTCGACGTCATTTTCTTCAAGAAGCCTTCTGTTATTGGAGCCGTTCAGGGCATGATCACTGGCCTTGTTTGCATCACGCCAGCCGCTGGTCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTTTATCAGGAAGTGTGCCATGGTTCACTATGATGATATTAGGAAAGAAACTAAAAGTGTTTCAAAATGTTGATGACACCCTAGCTGTGTTCCACACTCATGCTGTGGCAGGATTTCTAGGAGGCATACTCACCGGGCTGTTTGCAGAACCCCGTCTATGTGCACTATTCCTTCCCGTCACAAACTCCAAAGGAGGGTTCTATGGAGGCTCTGGTGGAGTCCAAATCCTCAAACAAATCGTAGGGGGCTTGTTCATCGTTGGGTGGAACCTTGTGGTCACCTCAATCATTTGTGTGGTTGTGAATTTCTTTGTTCCACTTAGAATGTCTGATGAGGAGTTGCTCATTGGGGATGATGCGGTTCATGGAGAAGAGGCTTATGCGTTGTGGGGTGATGGCGAGAAGCTTAGCATCTATACTGAGGAGACCACGCACCATGGAGTACTGGCATCAAGCGGTGCCACTCAAGTGGTCTAG 1455 0.5271 MAASPPLPIAYQAGTSAAVPDWLNKGDNAWQMVSATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVIWAYKMSFGRKLLPLWGRAGPSLGQKFLVKQAALPATTHYYHTGDVESPEIEPFYPMASMVWFQCVFAAITVVILAGSVLARMNFKAWMMFVPLWVTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRLKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANIDSSMAVINTNISAATSMLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLVQGWAAIVMGVLSGSVPWFTMMILGKKLKVFQNVDDTLAVFHTHAVAGFLGGILTGLFAEPRLCALFLPVTNSKGGFYGGSGGVQILKQIVGGLFIVGWNLVVTSIICVVVNFFVPLRMSDEELLIGDDAVHGEEAYALWGDGEKLSIYTEETTHHGVLASSGATQVV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0024 484 PANTHER AMMONIUM TRANSPORTER MEP2 16 463 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod09g0024 484 Gene3D Ammonium transporter AmtB like domains 8 456 IPR029020 -
Dod09g0024 484 PRINTS Rhesus blood group protein signature 237 255 IPR002229 GO:0005887
Dod09g0024 484 PRINTS Rhesus blood group protein signature 268 290 IPR002229 GO:0005887
Dod09g0024 484 PRINTS Rhesus blood group protein signature 142 158 IPR002229 GO:0005887
Dod09g0024 484 SUPERFAMILY Ammonium transporter 22 435 - -
Dod09g0024 484 ProSitePatterns Ammonium transporters signature. 198 223 IPR018047 GO:0008519|GO:0016020|GO:0072488
Dod09g0024 484 TIGRFAM amt: ammonium transporter 27 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Dod09g0024 484 PANTHER AMMONIUM TRANSPORTER 16 463 - -
Dod09g0024 484 Pfam Ammonium Transporter Family 29 453 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0024 Dod-Chr9 429988 437090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0024 135 463 Inorganic Solute Cotransporters AT2G38290 71.125 1.11e-168 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0024 K03320 - gmx:100785993 853.588