Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0007 ATGGGAGACGGGAACCGCGGGAACAGCGGAGGAGGCAACAACAGCGGGAGCGGCGGGAACAAGCCGGAGTGGCTTCAGCAGTACGATCTGATCGGGAAGATCGGCGAAGGCACGTACGGCCTCGTGTTCCTGGCGCGCATCAAGTCCCCTACCAACCGCGGCAAATCCATCGCCATCAAGAAATTCAAACAGTCCAAAGACGGCGACGGTGTCTCTCCCACCGCTATTCGCGAAATCATGCTGCTCAGGGAGATAACGCACGAGAACGTTGTGAAGCTTGTAAATGTTCACATTAATCATGCGGACATGTCTCTGTATCTTGCTTTTGACTATGCCGAGCATGATCTCTATGAAATAATTAGACATCATAGGGACAAAGTCAACCATTCCATTAATCAGTACACCGTTAAATCATTACTCTGGCAGTTGCTCAATGGACTAAATTATCTGCACAGTAATTGGATAATACATCGAGACTTAAAGCCGTCAAATATATTGGTTATGGGTGAAGGGGAGGAACATGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGAATATATCAAGCCCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAACCACTATTTCAAGGTGCGGAAGTCAAAGCTACACCGAATCCCTTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTGGAAAAGTGGCCTTCCTTAGCAAATCTTCCCCATTGGCAACAAGATGTGCAACATATACAAGGGCACAAATATGACAACACCAGCCTCTATAATGTTGTCCACCTATCTCCCAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGTATTACAGCAGCCCAAGCTTTGGAGCATGAGTATTTCAAACTTGAACCACTACCCGGGCGGAATGCACTTGTACCCTGCCAACCGGGAGAGTCATTTGTGAATTATCCCACGCGTCCAGTGGACACAACAACTGATTTTGAAGGAACAACCAATATGCAACCTTCGCAGCCGGTTTCGTCTGGAGCTGCAGTTTCTGGCAGCATGCCTGCTGGTCATGTGTCAAACAGATCAGTCCCTCGGCCAATGAATGTGGTTGGCATGCAAAGAATGCCTCATCAGGCAATGCAAGCTTATAATCTTACATCTCAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGCATCCCAATGCAAAGGGGAGTTCCACAGCCCCACCAGCAGCAACAGTTGAGAAGAAAAGACCAAATGGGGATGCCAGGATATCCTCCTCAGCAGAAGTCAAGACGTATTTAA 1431 0.4696 MGDGNRGNSGGGNNSGSGGNKPEWLQQYDLIGKIGEGTYGLVFLARIKSPTNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLANLPHWQQDVQHIQGHKYDNTSLYNVVHLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKLEPLPGRNALVPCQPGESFVNYPTRPVDTTTDFEGTTNMQPSQPVSSGAAVSGSMPAGHVSNRSVPRPMNVVGMQRMPHQAMQAYNLTSQAGMGGGMNPGGIPMQRGVPQPHQQQQLRRKDQMGMPGYPPQQKSRRI* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0007 476 SMART serkin_6 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0007 476 PANTHER CELL DIVISION PROTEIN KINASE 17 475 - -
Dod09g0007 476 MobiDBLite consensus disorder prediction 1 20 - -
Dod09g0007 476 CDD STKc_CDK8_like 27 338 - -
Dod09g0007 476 Gene3D Phosphorylase Kinase; domain 1 19 110 - -
Dod09g0007 476 MobiDBLite consensus disorder prediction 377 405 - -
Dod09g0007 476 ProSitePatterns Protein kinases ATP-binding region signature. 34 61 IPR017441 GO:0005524
Dod09g0007 476 SUPERFAMILY Protein kinase-like (PK-like) 23 339 IPR011009 -
Dod09g0007 476 MobiDBLite consensus disorder prediction 429 476 - -
Dod09g0007 476 ProSiteProfiles Protein kinase domain profile. 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0007 476 PANTHER CYCLIN-DEPENDENT KINASE E-1 17 475 - -
Dod09g0007 476 Pfam Protein kinase domain 28 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod09g0007 476 Gene3D Transferase(Phosphotransferase) domain 1 111 351 - -
Dod09g0007 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0007 Dod-Chr9 193799 207742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0007 21 476 Core Cell Cycle Gene Families AT5G63610 78.308 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Dod09g0007 Pkinase 1.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0007 K02208 - gmx:100813433 874.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod09g0007 09 193799 207742 Dod09g0007 09 193799 207742 ECH