Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod09g0002 ATGTCACTGCTTTGCTATGCCGCCATGCCGCTGCTTAGGTGCTACGCCGCATCGCCGCTCTGCCAAGCCTCTGCTCCGCTCGCTCAAGCTCGCGCTTCAGTTTCAATTTTGTCATTAGGCACTGATTCCTTTGCTAAGAAGGATTGGTATGACATGAAGGCCCCATTTGTGTTCCAGGTCAAAAACCTTGGCAAGACCCTTATCACTCATACTCATGGTACTAAGATTGCTTTAGAAGGGCTCAAACATCGAGTGTTTGAGATCTCACTGGCTGATCTCCAAGGGGATGAGGACCTTGCATTCAGGAAGATTAGGATGAGAGCTGAAGATGTTCAAGGGACGAATGTTCTGACCAATTTATGCGGAATAGATTTCATAACTGACAAGCTGTGGTCATTGGTTCGGAAATGGCAAACTCTTATTGAAGCTCATGTGGAAGTGAAGATAACTGATAATTACACTTTGAGGATGTTTTGTATCGGATTTTCCAAGAGGAGATTTAACTAG 507 0.4517 MSLLCYAAMPLLRCYAASPLCQASAPLAQARASVSILSLGTDSFAKKDWYDMKAPFVFQVKNLGKTLITHTHGTKIALEGLKHRVFEISLADLQGDEDLAFRKIRMRAEDVQGTNVLTNLCGIDFITDKLWSLVRKWQTLIEAHVEVKITDNYTLRMFCIGFSKRRFN* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod09g0002 168 ProSitePatterns Ribosomal protein S3Ae signature. 81 93 IPR018281 GO:0003735|GO:0005840|GO:0006412
Dod09g0002 168 PANTHER 40S RIBOSOMAL PROTEIN S3A 41 168 - -
Dod09g0002 168 SMART Ribosomal_S3Ae_2 40 166 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod09g0002 168 Pfam Ribosomal S3Ae family 41 167 IPR001593 GO:0003735|GO:0005840|GO:0006412
Dod09g0002 168 PANTHER 40S RIBOSOMAL PROTEIN S3A 41 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod09g0002 Dod-Chr9 106333 107711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod09g0002 42 168 Cytoplasmic Ribosomal Protein Gene Family AT4G34670 74.016 8.97e-67 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod09g0002 K02984 - gmx:100818730 214.927