Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2330 ATGAGCATCTTCTGTTGCCTTGCATATGATCGCGGGAATAATGTGGGCATCGACGGAGTGGTGGAGGATGATGATGATTTAGAGTTGAAGAAGAAGACGAAGAGGAACAAGGCAGCAGCCATCAGCTTCGGGTTTCGGGAGCTTGCATGGACAACAAGGGGTTTCAAGGAAGACAATTTGATCGGTGAAGGAGGTTTTGGAAGGGTTTACAAGGGTCGTCTCCCCACCGGCCAGGTGGTTGCTATAAAACAATTGAGTCACGGTGGGCACCAAGGTTTCCAAGAATTTGTCACCGAGGTACTTATGCTAAGCCTCCTCCACCATGCTAATCTCGTTAACTTAATTGGCTACTGCACCGATGGCGAGCAGAGGCTTTTGGTTTACGAATACATGCCTATGGGTAGCCTCGAACGTCATCTTTTTGATCCTAACCCAGAGAAAGGACCACTAAGCTGGAGTACTCGGATTAAGATTGCTGTTGGGGCTGCTCTAGGATTGGAATATCTTCATTGTAAAGCTCGCCCATTTTTAAGTGACAAGAAAAAGTTTGTGCAAATTGTTGACCCTCTTTTGGAAGGAAGCTATCCCTTACGCGCTATGCAACATGCAATTGCTATTACTGCGATGTGTCTCCAGGAGCAACCGAATTTCCGTCCAATTGTTAGTGACATTGTTGTTGCACTCGAGTATATAGTTTCTCAGGGCATCCTTGAAGCCCATAGGCAAGGGGTGCGTAGCCCACTACTACAACCACAACTAGAAATTAAGAGAAACTAA 777 0.4633 MSIFCCLAYDRGNNVGIDGVVEDDDDLELKKKTKRNKAAAISFGFRELAWTTRGFKEDNLIGEGGFGRVYKGRLPTGQVVAIKQLSHGGHQGFQEFVTEVLMLSLLHHANLVNLIGYCTDGEQRLLVYEYMPMGSLERHLFDPNPEKGPLSWSTRIKIAVGAALGLEYLHCKARPFLSDKKKFVQIVDPLLEGSYPLRAMQHAIAITAMCLQEQPNFRPIVSDIVVALEYIVSQGILEAHRQGVRSPLLQPQLEIKRN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2330 258 Gene3D Transferase(Phosphotransferase) domain 1 45 240 - -
Dod08g2330 258 SUPERFAMILY Protein kinase-like (PK-like) 42 170 IPR011009 -
Dod08g2330 258 Pfam Protein tyrosine and serine/threonine kinase 58 172 IPR001245 GO:0004672|GO:0006468
Dod08g2330 258 ProSitePatterns Protein kinases ATP-binding region signature. 61 83 IPR017441 GO:0005524
Dod08g2330 258 PANTHER OS07G0668900 PROTEIN 173 235 - -
Dod08g2330 258 PANTHER OS07G0668900 PROTEIN 29 175 - -
Dod08g2330 258 ProSiteProfiles Protein kinase domain profile. 55 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod08g2330 258 PANTHER OS07G0668900 PROTEIN 173 235 - -
Dod08g2330 258 PANTHER OS07G0668900 PROTEIN 29 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2330 Dod-Chr8 51379756 51381758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2330 173 231 Glycoside Hydrolase AT3G07070 42.373 1.68e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Dod08g2330 PK_Tyr_Ser-Thr 6.2e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2330 - - ahf:112805431 238.424