Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2324 ATGGCAGGTCAGGGCTCTAATGAAGGCTCCAGTTCTGGAAATATGTCGGCTGAGTGCTCAGATTCAACATTTCAGCTCAATATCAAGACTTTAGATTCCAGGGTCTACAGTTTTGTAGTCAACAAAAATATGGCTGTTTCGTCGTTAAAAGAGAAAATTGCAAATGAAACTGGTGTTCCAGTTGGTCAGCAACGGCTGATTTTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTATCATGTCGAGAATGGGCATACCTTGCATTTAGTCGAAAGGCAACCAAATCAGTCAGAGGCTTTGGGTACTAGTGCTGGTGAGCCATCCGGTACTAATGGTAACCAAGGCTCAGCGGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTCGGAACTTTTAATGTGGGGGACCAAGGTGAAGGCATTGGTCCTGACCTCACTCGGGTTATTGGTGCAGTTTTGAATTCTATTGGAATTGGTGGCCAAAACACAAGTAGTGTTCCTAATGCTACCCAGACTTCTTCGGCTCCATCAGGGAATGAAGCTGAAGGAATGCATGCTGGGAATCAAAATGCAACCGGAAATCAAGCACAGTCTGGTCAGCCATCTCCTGGTCAGGCATTCCAAACTCTGCCTCAAGTTGTTCAGATTCCTGTGGCTGCAGGAGCCATTCCGATTCCTTCTCTCAATTCTCCAATTCCTGATTCATTGAACACACTCTTTGAATTTATAAATCACATGGAACAGACACTGTCCCAAAATGGGTATCGCCCAAATTTCTCTTCAACTAACCCTGGAGATCAACGAGTTGAATTGCCTTCCAATGCACAAGGGTTGCCGACAGTTGAAGCATTAAGTACCATCTTGCATCGTGCAGAACAGTTGCTTAATCATCAAGCTGTTGCTGCGCTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACATCTTCTGATTTAAGTATAAGGGGTCAAATACAGTCAGAGTCTGCTCAAATAGGACTTGCTATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGAACAATGTTGACACTGCGGATGGGGCAGTCTCCTGCAGAATCCGTTGTTAATGCTGGACCTGCTGTTTATATTTCTCCATCAGGACCAAATCCTATAATGGTGCAGCCCTTTCCTCTTCAAACAAACTCACTCTTTGGTGGTCCTGTTCCTTCTTCAACTCCTCCAACAATTGGTGCCATTGGTATTGGAAGTGCTCCTAGGAATGTAAACATTCATATACATGCTGGTACCTCTCTTGCACCCATTGTTTCAGCAATTAATTCTAGGGCAAATAACGGAGAAGGGGCAAGAAGTGAACAACGTAATGAGCCTGGCTCTGGTGGTCCAGGTTCTGCACGGGTGTTACCTGTTAGAAATGTCATAGCAGCGGCTCTCCCATCTCACCCTCCTGGTCTTGGAGTTGCTAGTAGCATGCAAACTGGGTTAGGTGTTTCTACTTCACAGCCACCTTCTGATTCAGCTCCTTGGTCGTCTGTTGTAGCTGAAACCAATTCCCTTATTAGAAACTTAGTACGTAATATGCAAGGAGATAACACAGTTCCACCAGGTCAAATGGAATCAACTAGCCGGGACTTGTCTGCTGCTTCTGAATCAAGACCTGCACAGGGAAATGAACAGCAAGATACCATGGAGATGAATGGCCTCAGAGCTGCAAGTTCATCCTCTGTTGACTGTGCCTCTGCAAGTGGTGTACATAAGCCTCAAACCGAGGGAGTGCAAACCTGTAGTAATGTTGAGAGGGATGTTTTGGTTGACAAATGTGTTTCAAGTTCTTCTGGTCAAGGTTTACAAAGTTGTTCTAGTGGAGAAACAATAGTAGAATCAGAACAAGTAGAAGATGCTCCATTTGTAAGTGAAAGACAAGGTGTAACTGAACCTACGAAAGCTGCTCCTCTTGGATTGGGCTTGGGCATGAGTGGTTTGGAGCGTAAGAGGCGCACTCGACTCCAACCTTCTCTAAGCAAAGGTCCTGATGATGGATCATCCAGTTCTTCTGTCAACCAAAGTCAGCAAACCCAAACAGATAGTCAACATATATTGCAATCTCTTGCAAGCCAAGGATCTGCTGCAAATTTGAGGAATGCTAATGGGCCATCCCAGGGGCCCTTGCCCTCCAGTGATCAGCAGATTGATATTGCTGGTTTGATGTCTCAGGTTTTACATAGCCCTGCATTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACCGGGGTTGACTCACCTGATGGCTTGAGGAATATGTTGCAGCAGTTCACCCGGAGCCCACAGATGATGAACACAGTCAATCAAATTGTCCAACAGGTTGGCGGTCAGGATATAGGAAGTATGTTTGCTGGAACGGAAAGGGGGCAAGAGGGTGGTATTGACTTGTCAAGGATGTTTCAGCAAATGATGCCTATTGTATCTCGAGCCCTCGGTGGGGAAACTTCTCCATTATTCTCTGCTGCAGAACCTGACCTCCCTGCGCCCTACAGAGATGAAAATTTGGATAATACAAGTTTACAGCTCAACCTTCAACAAGTGGCAGATAGGATTGAGCACCAGAGTCCACCTACAAATGTTTTCCGTGCTGTAGCTGAAAATGCTGTGCGGGTATCTGGTGGTGGAAGTGCTTCCAGTGATCTTCTGGAAGAGTTATGCAGTAATGAAAGTCTTGCCAGAGAATATGTGGAGATGTTACAACATGATGTGAGACAGCGGCTCAATGGACATTCTGAGCTGGACAAGCCCTAA 2796 0.4574 MAGQGSNEGSSSGNMSAECSDSTFQLNIKTLDSRVYSFVVNKNMAVSSLKEKIANETGVPVGQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSEALGTSAGEPSGTNGNQGSAAPRNRVGQISHSVVLGTFNVGDQGEGIGPDLTRVIGAVLNSIGIGGQNTSSVPNATQTSSAPSGNEAEGMHAGNQNATGNQAQSGQPSPGQAFQTLPQVVQIPVAAGAIPIPSLNSPIPDSLNTLFEFINHMEQTLSQNGYRPNFSSTNPGDQRVELPSNAQGLPTVEALSTILHRAEQLLNHQAVAALSHIAGRLEREGTSSDLSIRGQIQSESAQIGLAMQHLGAFLLELGRTMLTLRMGQSPAESVVNAGPAVYISPSGPNPIMVQPFPLQTNSLFGGPVPSSTPPTIGAIGIGSAPRNVNIHIHAGTSLAPIVSAINSRANNGEGARSEQRNEPGSGGPGSARVLPVRNVIAAALPSHPPGLGVASSMQTGLGVSTSQPPSDSAPWSSVVAETNSLIRNLVRNMQGDNTVPPGQMESTSRDLSAASESRPAQGNEQQDTMEMNGLRAASSSSVDCASASGVHKPQTEGVQTCSNVERDVLVDKCVSSSSGQGLQSCSSGETIVESEQVEDAPFVSERQGVTEPTKAAPLGLGLGMSGLERKRRTRLQPSLSKGPDDGSSSSSVNQSQQTQTDSQHILQSLASQGSAANLRNANGPSQGPLPSSDQQIDIAGLMSQVLHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTRSPQMMNTVNQIVQQVGGQDIGSMFAGTERGQEGGIDLSRMFQQMMPIVSRALGGETSPLFSAAEPDLPAPYRDENLDNTSLQLNLQQVADRIEHQSPPTNVFRAVAENAVRVSGGGSASSDLLEELCSNESLAREYVEMLQHDVRQRLNGHSELDKP* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2324 931 MobiDBLite consensus disorder prediction 486 512 - -
Dod08g2324 931 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Dod08g2324 931 CDD Ubl_ubiquitin_like 26 93 - -
Dod08g2324 931 PANTHER OS07G0498800 PROTEIN 6 927 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 492 512 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 98 123 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 444 467 - -
Dod08g2324 931 SUPERFAMILY Ubiquitin-like 18 98 IPR029071 -
Dod08g2324 931 MobiDBLite consensus disorder prediction 165 212 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 527 562 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 611 628 - -
Dod08g2324 931 PRINTS Ubiquitin signature 34 54 IPR019956 -
Dod08g2324 931 PRINTS Ubiquitin signature 55 75 IPR019956 -
Dod08g2324 931 PRINTS Ubiquitin signature 76 97 IPR019956 -
Dod08g2324 931 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 6 927 - -
Dod08g2324 931 Gene3D - 12 107 - -
Dod08g2324 931 MobiDBLite consensus disorder prediction 611 699 - -
Dod08g2324 931 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Dod08g2324 931 SMART ubq_7 24 95 IPR000626 GO:0005515
Dod08g2324 931 MobiDBLite consensus disorder prediction 675 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2324 Dod-Chr8 51270371 51282226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2324 25 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.437 4.84e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2324 - - gmx:100811870 1319.68