Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2304 ATGGCCAAAGTTATGCTTGTTTTGGCTGGCCTCATTGGTTTATGTTGTTTCACAATCAATACCTATGCCTTCTCACCTTCTGGATGGACCAATGCCCATGCCACATTTTATGGGGGTAGTGATGCCTCAGGAACTATGGGAGGAGCTTGTGGGTATGGGAATCTGTACTCTACTGGGTATGGGACTAGAACTGCGGCTTTGAGTACTGCCTTATTCAATGATGGAGCTTCATGTGGGGAGTGCTACAAAATCATGTGCGATTATAAAACTGACCCCAGATGGTGCATAAAAGGAACATCTGTCACCATAACCGCCACAAACTTTTGCCCTCCTAATTTTGATCTTCCAAACAACAATGGAGGCTGGTGCAACCCACCCTTGAAGCATTTTGATATGGCTCAACCTGCTTGGGAAAAGATTGGCATCTACAGAGGAGGGATCGTTCCCGTCATATTCCAAAGGGTCCCATGCAAAAAGCACGGAGGGGTTAGGTTCACTGTCAATGGGAGAGACTACTTTGAGCTTGTGTTGATCAGCAACGTGGCCGGGGCTGGATCCATCCAATCTGTGTCCATCAAAGGCTCCAAAACTGGGTGGATGGCCATGTCAAGAAACTGGGGTGTTAATTGGCAATCCAATGCTTATTTGAATGGCCAATCTTTGTCCTTCAAGGTCACAACCACTGATGGAGAAACCAGAGTTTTCCAGGATATAGTTCCAGCAAATTGGGCTTTTGGTCAAACTTTCTCAAGCCCTGTCCAATTCTAA 768 0.4622 MAKVMLVLAGLIGLCCFTINTYAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGECYKIMCDYKTDPRWCIKGTSVTITATNFCPPNFDLPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVIFQRVPCKKHGGVRFTVNGRDYFELVLISNVAGAGSIQSVSIKGSKTGWMAMSRNWGVNWQSNAYLNGQSLSFKVTTTDGETRVFQDIVPANWAFGQTFSSPVQF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2304 255 Gene3D - 162 255 IPR036749 -
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Dod08g2304 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Dod08g2304 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Dod08g2304 255 PANTHER EXPANSIN 11 255 - -
Dod08g2304 255 SMART dpbb_1 64 152 IPR007112 -
Dod08g2304 255 PANTHER EXPANSIN-A15 11 255 IPR002963 GO:0009664
Dod08g2304 255 Gene3D - 15 158 IPR036908 -
Dod08g2304 255 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Dod08g2304 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Dod08g2304 255 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Dod08g2304 255 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Dod08g2304 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Dod08g2304 255 Pfam Lytic transglycolase 64 150 IPR009009 -
Dod08g2304 255 SUPERFAMILY Barwin-like endoglucanases 28 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2304 Dod-Chr8 51085631 51088205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2304 64 255 Expansin Gene Family AT1G20190 81.250 6.16e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2304 - - gmx:548040 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2304 08 51085631 51088205 Dod08g2304 08 51085631 51088205 ECH
Dod08g2304 08 51085631 51088205 Dod09g2306 09 44289364 44290218 PCT