Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2300 ATGGTTACCACAATGGAGACTAGCACGCCGTCATCGGCGCCGCAGTCGTCGGCTGGGGACTCCAACAGCCCGAAGTTCCCGCGAAAAAACCTCCCTTCGCCGTGGGCTCAGGTTGTACGCGGCGGCGAGGCGGAATCAGCCGCCGGAGCTCGTCAATCTCCGCCGCTACCGCCGCCATCATCCTCCTCTTCGTCTTCCTCACTTGCCGCCAGCACTGCATCGGCGCCAGACCAACAGCCGTCATCTGATTCCTCCTCCCCAAAGGCGGTCCCTGCTTCGCCTCCGGCGGACAATTGCGGCGGTGTTTCAGCTGCTCCTTCTCCTGATGGCTCTGATGGCGCCGGCGACGGCAATGCCGGTCGGTCTAAGAAGCAGGCATGGAACAAGCCCTCGAACGGTGTCGTTTCTGAGGCTGGTCCAGTGATGGGTGCTGAATCGTGGCCAGCTTTGTCTGAATCGACAAAAGCCTCTGGTAAATTGGCAGCTGATTCATCTTCCAAGACTGTTACTGTTGATGGATCACTGTCTACATCTCAGGGTCCTGCAACATCGCAAACTCCTCAGAGACAAGCTATTAATCACACAAATGCAAAAGCTAATCCTGCAACAAATTACAGTACGCCTAATAGGCAAAGAACGATGAAGCGAGGAGGTGGCAGCAGCAATATTGGGTCTGGTCCTGCTCAGAGTGGCTTTTCCAACCCTCCCCCACCTCCACCGCCACCACCTTTTCCTGTATATCAGCTCCCTCCAGTTGGTTATAGGAATGTGGTACCCGGAGTTCATGACCATTCTCCAAGGGATCATTACCGGCATAGTAACTGGGATGCTAGACCACCAGTTGGGGGCTTTGTGCCTGGGATGAATGAACATCGGGGTTCATCTCGCAGGGGTAATTTTGGGCCGCATCCTCGTGGAGATGGCTCCTATCATAATTCTTACGGTGGCAGGCGTGATCATGATCGTGTAAATTATGGTAATAATAGAGATGCTCATATGCACCAGCCAAGGATGCCTCCAAGGGGATTGAGGCATCCACCACCTAATACTGCTGCATTTGTTGGCCCCCCGCCTATTGGACCCTTTGGAAACCCCATGGGCTTTCAAGAGTTCTATTATGTTCCAACAATGCCAATGGAACACTTTAGGGGCATGCCATTCTATACCCACAACCCTCCTCCTGCAATGTACTTCCCTGCTGCAGAATCCCCTCCGAACAATGTGAACAGTATGATAGCCAACCAAATTGAATATTACTTTAGTGATGCTAATTTAGTGAAAGATGAGTATTTAAGGTCCAACATGGATGAACAGGGGTGGGTTCCAATTACCTTGATAGCAAACTTCCCTCGAGTTAAAAGTCTGACAAGCAACATTCAGTTGATTTTGGATTCCTTGAGGAATTCCACTGTTGTGGAAATACAGGGTGACAAGTTGAGGAGGCATACTGAGTGGATGAGATGGCTGCCTGCTGCTCATCTTCGAGCTGATTCTGGTTTGGTATCTCCTGGAGGATCGAGGTTCAATAACCTTGCGGCTGATTTTCAGTCCATCACCTTGGAAGAAGCAACTAAAGATGAAGGTCCAACAGAGTCTTCTTCCATCCAGCCTCAACTCCCAAATGGTGGTGGTGATGCTGTCAACAGTAATTAA 1653 0.5112 MVTTMETSTPSSAPQSSAGDSNSPKFPRKNLPSPWAQVVRGGEAESAAGARQSPPLPPPSSSSSSSSLAASTASAPDQQPSSDSSSPKAVPASPPADNCGGVSAAPSPDGSDGAGDGNAGRSKKQAWNKPSNGVVSEAGPVMGAESWPALSESTKASGKLAADSSSKTVTVDGSLSTSQGPATSQTPQRQAINHTNAKANPATNYSTPNRQRTMKRGGGSSNIGSGPAQSGFSNPPPPPPPPPFPVYQLPPVGYRNVVPGVHDHSPRDHYRHSNWDARPPVGGFVPGMNEHRGSSRRGNFGPHPRGDGSYHNSYGGRRDHDRVNYGNNRDAHMHQPRMPPRGLRHPPPNTAAFVGPPPIGPFGNPMGFQEFYYVPTMPMEHFRGMPFYTHNPPPAMYFPAAESPPNNVNSMIANQIEYYFSDANLVKDEYLRSNMDEQGWVPITLIANFPRVKSLTSNIQLILDSLRNSTVVEIQGDKLRRHTEWMRWLPAAHLRADSGLVSPGGSRFNNLAADFQSITLEEATKDEGPTESSSIQPQLPNGGGDAVNSN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2300 550 ProSiteProfiles La-type HTH domain profile. 402 491 IPR006630 -
Dod08g2300 550 MobiDBLite consensus disorder prediction 1 249 - -
Dod08g2300 550 CDD LAM 410 481 - -
Dod08g2300 550 MobiDBLite consensus disorder prediction 1 28 - -
Dod08g2300 550 Gene3D - 400 489 IPR036388 -
Dod08g2300 550 MobiDBLite consensus disorder prediction 529 550 - -
Dod08g2300 550 PANTHER LA-RELATED PROTEIN 1B 25 536 - -
Dod08g2300 550 PANTHER LUPUS LA PROTEIN-RELATED 25 536 IPR045180 -
Dod08g2300 550 MobiDBLite consensus disorder prediction 521 550 - -
Dod08g2300 550 Pfam La domain 412 468 IPR006630 -
Dod08g2300 550 MobiDBLite consensus disorder prediction 150 230 - -
Dod08g2300 550 MobiDBLite consensus disorder prediction 62 91 - -
Dod08g2300 550 MobiDBLite consensus disorder prediction 289 335 - -
Dod08g2300 550 MobiDBLite consensus disorder prediction 231 249 - -
Dod08g2300 550 SMART la 406 482 IPR006630 -
Dod08g2300 550 MobiDBLite consensus disorder prediction 312 328 - -
Dod08g2300 550 SUPERFAMILY "Winged helix" DNA-binding domain 403 490 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2300 Dod-Chr8 51057788 51062453 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2300 K18757 - gmx:100785504 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2300 08 51057788 51062453 Dod08g2300 08 51057788 51062453 ECH
Dod08g2300 08 51057788 51062453 Dod09g2303 09 44263999 44268298 PCT