Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2290 ATGGATCAAGAAGTGGAGCTTGCTTCTGATCATTCTCGTTTGGAACAAGGACTAGTATCTAAGATGGAACAAGAACAAGAGTCCAAACCGACCAAAAAAACTGAGAGTGTTTCTTTCTTTGGCTTGTTTGCTGCAGCTGATGCAGTTGACTATGTGTTAATGTTCCTAGGAAGTGTTGGTGCTTGTGTCCATGGTGCGGCTCTTCCTTTCTTCTTTGTTTTGTTCGGTCGCATGATTGATTCTCTGGGACATACTTCTAAGAATCCTCACAAAATGTCATCACGGATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGACTTCTTGTTCTGGTATCGGCTTGGATGGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACAGCTCGGTTGCGATTAAAGTATTTGAAGTCAGTGCTAATGAAGGACATTAATTTCTTTGACAATGAAGCAAGAGATGCTAATATAATTTTCCACATATCCAGTGATGCAATATTGGTACAAGATGCAATTGGTGACAAGACAGGCCATGCCATTCGTTACCTTTCTCAATTCATTATTGGATTTGCCATTGGATTTACATCAGTGTGGCAGCTTACACTGCTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCCGGAGGTGGCTATACAATAATTATGTCCACTTTATCGGAAAAGGGTGAAGCAGCATATGCTCAAGCTGGGAAGGTAGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTGGTGCATACTCCAAGTCACTTGATAATGCTCTTAAGATGGGCAAAAAGAGTGGTTTTGCTAAAGGAATTGGAGTTGGATTTACATATGGGCTATTGTTTTGTGCTTGGGCATTGCTTCTCTGGTATTCTAGCATACTAGTGAGACATCACAAGACAAATGGAGGGAAAGCTTTTACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAACCTTGGTTCCATTGCTAAAGGGCGTGTAGCTGCAGCAAACATCATGAACATGATTGCATCCGTTTCAGACACTTCTAAGAGGTTGCATGAGGGCACTGTTTTGCCACAAGTAGAAGGAAAAATTGATTTTTGTGAGGTGTGCTTTGCTTACCCTTCAAGGTCCAATATGGTCTTTGAAAATCTGAGTTTCTCAATCAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCTAGTGGCTCGGGAAAGAGCACAATCATTTCCATGATTCAAAGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGGTATGACCTAAAGAATCTCCAATTGAAATGGTTGAGAGAACAGATGGGTTTGGTAAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGCAACATTTTATTCGGAAAAGAGGATGCTGACATGGATCAAATCATACAAGCTGCCAAGGCGGCAAATGCTCATTCCTTCATTGAAGGGTTACCTGATGGTTATCAAACTCAGGTTGGCGAGGGTGGCACCCAACTTTCAGGGGGTCAAAAGCAAAGAGTTGCTATTGCTAGAGCAGTGCTCAGAAACCCCAAAATATTGCTTTTAGATGAAGCCACCAGTGCTTTAGATGCTGAATCAGAGCTCATAGTCCAGCACGCATTAGAAAAAATAATGTCAAACAGAACAACAATAATTATTGCACATAGATTATCCACCATCCGTGATGTAGATGCAATTGTTGTCTTGAAGAATGGTCAAGTTGTTGAAAGTGGGACTCATTCGGAATTAATGTCAAAAAATGGGGAATATGTGAACCTGGTGAGCTTGCAGGCATCACAAAACCTCAGAAACTCTAGCTCCATAACTCGCTCTGGAAGTCCGAAAAATGTGAGTTTTAGAGAACCTTCAGACAGCCAGAACTATCAAGAGTTGAATTCAACAATGGAGTTTCAAACAAGTGATCAAGGCTTGCCATCAAAAACTGCTTCTATTCCATCACTTGTGGACTTGCTGAGACTGAATGCTCCAGAGTGGCCTTATGCAGTACTTGGGTCAGTTGGTGCAGTTTTGGCTGGCATGGAAGGTCCTCTCTTTGCTCTTGGAATCACTCATATTTTGACTGCATTTTACTCTTCTCATGGTTCTAAAATCAAGCAAGAAGTTGATAGAGTAGCACTTGCATTTGTTGGAGCGGCTGTTGTCACAATACCTATTTATCTATTGCAACACTACTTTTATACACTGATGGGAGAGCGCCTCACAGCCCGTGTGCGTTTATTGATGTTCTCAGCAATTCTTACCAATGAGGTTGCGTGGTTTGATTTGGATGAGAACAACACTGGCTCACTAACAGCCATGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTGTCCACCATTGTGCAAAATGTAGCTCTAACAGCAACAGCATTTGCAATTGCCTTCACATTCAGTTGGAAACTCACTTCTGTGGTTGCAGCATGCCTTCCCCTTCTCATAGGAGCTTCTATTACAGAGCAATTATTTCTCAAGGGATTTGGAGGAGATTATGGCCACGCTTACTCTAGAGCAACTTCGTTAGCACGGGAAGCTATTGCAAACATACGCACCGTGGCTGCTTTTGGCGCGGAAGATCGAATCTCAATCCAGTTTGCCTCTGAATTGAACAAGCCTAACAAGCAAGCATTTATAAGAGGGCACATATCAGGTTTTGGCTATGGTGTTACACAACTGTTTGCTTTCTGCTCCTATGCACTTGGCCTTTGGTATGCATCCATTCTAATCAAGCAAAAGGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATCGTAACTGCTCTAGCAATAGCAGAAACACTAGCCCTTACCCCGGACATTGTGAAGGGGTCACAAGCACTGGGATCCGTTTTCAGCATTCTCCAAAGGAGAACAGCCATCAACCCCAATGACCCCAACTCCGAGATGGTATCTGACATCAAAGGAGAGATAGAGTTCAGAAATGTGTGCTTCAACTACCCGATGAGACCTGATATCACCATATTTCAGAACTTAAACCTTAGAGTCTCGGCAGGTAAGAGTCTGGCAGCAGTGGGACAAAGTGGTTCAGGAAAGAGTACTGTGATTGCTTTGGTAATGAGATTTTATGACCCCACTTCTGGAGCTGTTCTGATAGATGAATGTGACATCAAGAGCCTGAACTTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAGCCTGCTTTGTTTTCTACCACAGTTTATGAAAACATCAAGTATGGCAATGAGGAGGCATCAGAAATAGAGGTAACGAAGGCAGCCAAAGCAGCAAATGCTCATGAATTCATTAGTAGAATGCCAGAAGGGTACAGAACTCAAGTTGGTGAAAGAGGGGTGCAGTTATCAGGAGGACAAAAACAAAGGGTGGCAATTGCGAGAGCTATACTTAAAGATCCATCCATTCTTCTATTGGATGAAGCAACAAGTGCACTGGACACTGTGTCAGAGAGGCTGGTCCAAGAGGCTCTGGATAAGCTTATGGAAGGGAGAACTACAATTTTGGTGGCTCACAGGTTGTCAACTGTTAGAGATGCAGACAACATTGCAGTGCTGCAAAATGGGAGAGTTGCTGAAATGGGAAGCCATGAGAGGCTGATTTCAAAACCAGGAAGCATCTATAAGCAATTGGTTAGTCTGCAGCAAGAAAAGCATGACCAAGAAGACCATTAA 3768 0.4294 MDQEVELASDHSRLEQGLVSKMEQEQESKPTKKTESVSFFGLFAAADAVDYVLMFLGSVGACVHGAALPFFFVLFGRMIDSLGHTSKNPHKMSSRISEHALYLVYLGLLVLVSAWMGVAFWMQTGERQTARLRLKYLKSVLMKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIIGFAIGFTSVWQLTLLTLAVVPLIAIAGGGYTIIMSTLSEKGEAAYAQAGKVAEEVISQVRTVYSFVGEEKAVGAYSKSLDNALKMGKKSGFAKGIGVGFTYGLLFCAWALLLWYSSILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRVAAANIMNMIASVSDTSKRLHEGTVLPQVEGKIDFCEVCFAYPSRSNMVFENLSFSISAGKTIAVVGPSGSGKSTIISMIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDQIIQAAKAANAHSFIEGLPDGYQTQVGEGGTQLSGGQKQRVAIARAVLRNPKILLLDEATSALDAESELIVQHALEKIMSNRTTIIIAHRLSTIRDVDAIVVLKNGQVVESGTHSELMSKNGEYVNLVSLQASQNLRNSSSITRSGSPKNVSFREPSDSQNYQELNSTMEFQTSDQGLPSKTASIPSLVDLLRLNAPEWPYAVLGSVGAVLAGMEGPLFALGITHILTAFYSSHGSKIKQEVDRVALAFVGAAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEVAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTATAFAIAFTFSWKLTSVVAACLPLLIGASITEQLFLKGFGGDYGHAYSRATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQAFIRGHISGFGYGVTQLFAFCSYALGLWYASILIKQKESNFGDIMKSFMVLIVTALAIAETLALTPDIVKGSQALGSVFSILQRRTAINPNDPNSEMVSDIKGEIEFRNVCFNYPMRPDITIFQNLNLRVSAGKSLAAVGQSGSGKSTVIALVMRFYDPTSGAVLIDECDIKSLNLRSLRLRIGLVQQEPALFSTTVYENIKYGNEEASEIEVTKAAKAANAHEFISRMPEGYRTQVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADNIAVLQNGRVAEMGSHERLISKPGSIYKQLVSLQQEKHDQEDH* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2290 1255 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Dod08g2290 1255 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 557 1246 IPR039421 -
Dod08g2290 1255 CDD ABC_6TM_Pgp_ABCB1_D1_like 54 351 - -
Dod08g2290 1255 CDD ABC_MTABC3_MDL1_MDL2 378 614 - -
Dod08g2290 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 614 IPR027417 -
Dod08g2290 1255 Pfam ABC transporter transmembrane region 690 959 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod08g2290 1255 Pfam ABC transporter transmembrane region 55 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod08g2290 1255 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Dod08g2290 1255 Gene3D ABC transporter type 1, transmembrane domain 41 977 IPR036640 GO:0005524|GO:0016021
Dod08g2290 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Dod08g2290 1255 MobiDBLite consensus disorder prediction 621 641 - -
Dod08g2290 1255 SMART AAA_5 1035 1221 IPR003593 -
Dod08g2290 1255 SMART AAA_5 404 590 IPR003593 -
Dod08g2290 1255 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524
Dod08g2290 1255 SUPERFAMILY ABC transporter transmembrane region 42 351 IPR036640 GO:0005524|GO:0016021
Dod08g2290 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
Dod08g2290 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 55 343 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod08g2290 1255 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 458 576 IPR039421 -
Dod08g2290 1255 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 37 479 IPR039421 -
Dod08g2290 1255 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 613 IPR003439 GO:0005524
Dod08g2290 1255 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524
Dod08g2290 1255 Gene3D - 998 1255 IPR027417 -
Dod08g2290 1255 Gene3D - 368 615 IPR027417 -
Dod08g2290 1255 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 458 576 - -
Dod08g2290 1255 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 37 479 - -
Dod08g2290 1255 PANTHER ABC TRANSPORTER B FAMILY MEMBER 13-RELATED 557 1246 - -
Dod08g2290 1255 Pfam ABC transporter 396 544 IPR003439 GO:0005524
Dod08g2290 1255 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod08g2290 1255 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524
Dod08g2290 1255 SUPERFAMILY ABC transporter transmembrane region 674 986 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2290 Dod-Chr8 50948610 50955149 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2290 25 614 Calmodulin-binding Proteins AT2G36910 37.271 5.97e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2290 K05658 - gmx:100787093 2112.42