Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2221 ATGACCGAAGCAGCAGGAGCAGAAGACGCTGTACGACGTCGTAACGCGTTGGCGGAGTATAGCAAGAAACTCCTTAAGAAGAAGGAATTGGAATCCAGAGTAGGATCAGTGAGAGAGAATTTGCGAGCTTCGAAGAAAGAGTACAACAAGACTGAGGATGATTTGAAGTCTCTTCAGAGCGTCGGGCAGATCATTGGGGAAGTTCTGAGGCCTCTTGACAATGAACGCTTGATTGTTAAAGCAAGCAGCGGACCCAGGTATGTGGTCGGCTGCCGCAGTAAAGTAGATAAGGAAAAATTGACTGCTGGTACGAGAGTGGTCCTTGATATGACAACGCTCACCATAATGCGAGCTCTTCCACGTGAAGTTGATCCAGTAGTTTACAATATGCTGCATGAGGATCCCGGTAATGTCAGTTACTCTGCTGTTGGTGGTCTATCTGATCAGATAAGAGAATTGAGGGAATCAATCGAATTACCTTTGATGAATCCTGAACTCTTTCTTCGAGTTGGAATTAAACCTCCTAAGGGTGTTCTCCTTTATGGACCTCCTGGTACTGGTAAAACACTGTTAGCTAGGGCAATTGCCAGTAATATAGATGCTAACTTCTTGAAGGTTGTTTCAAGTGCCATAATTGATAAGTACATTGGAGAAAGTGCCAGGTTGATTCGAGAAATGTTTGGGTATGCACGTGATCACCAGCCCTGCATCATTTTTATGGATGAGATCGATGCTATCGGTGGTCGTCGTTTCAGTGAGGGAACAAGTGCCGATCGTGAGATCCAAAGAACACTAATGGAGTTGCTTAATCAACTTGATGGGTTTGATCAACTCGGGAAGGTTAAAATGATAATGGCAACAAACAGACCTGATGTACTAGACCCTGCCCTCCTGCGTCCTGGAAGATTGGATAGAAAAATAGAAATTCCATTGCCAAATGAACAATCGAGGATGGAAATTCTCAAGATTCATGCTGCTGGGATTGCTAAGCATGGTGAAATAGACTATGAAGCTGTTGTGAAGCTTGCAGAGGGCTTTAATGGGGCTGATCTTCGCAATATCTGCACGGAAGCTGGAATGGCTGCAATTCGTGCGGAACGTGATTATGTGATCCATGAAGATTTCATGAAGGCTGTTCGAAAACTGAATGATGCTAAGAAACTTGAATCAAGTGCTCACTACAGTACTGATTTTGGGAAAGACTAA 1206 0.4403 MTEAAGAEDAVRRRNALAEYSKKLLKKKELESRVGSVRENLRASKKEYNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTAGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNICTEAGMAAIRAERDYVIHEDFMKAVRKLNDAKKLESSAHYSTDFGKD* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2221 401 CDD AAA 144 311 - -
Dod08g2221 401 Coils Coil 27 61 - -
Dod08g2221 401 Pfam Proteasomal ATPase OB C-terminal domain 65 120 IPR032501 -
Dod08g2221 401 PANTHER - 6 388 - -
Dod08g2221 401 ProSitePatterns AAA-protein family signature. 281 299 IPR003960 GO:0005524|GO:0016887
Dod08g2221 401 Gene3D - 131 311 IPR027417 -
Dod08g2221 401 Gene3D - 312 382 - -
Dod08g2221 401 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 6 388 - -
Dod08g2221 401 Pfam AAA+ lid domain 334 376 IPR041569 -
Dod08g2221 401 SMART AAA_5 174 313 IPR003593 -
Dod08g2221 401 Gene3D - 26 130 IPR012340 -
Dod08g2221 401 Pfam ATPase family associated with various cellular activities (AAA) 178 311 IPR003959 GO:0005524|GO:0016887
Dod08g2221 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 386 IPR027417 -
Dod08g2221 401 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 25 382 IPR005937 GO:0005737|GO:0030163|GO:0036402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2221 Dod-Chr8 49911852 49947921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2221 137 381 Miscellaneous Gene Families AT3G47060 39.600 1.54e-53 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2221 K03064 - gmx:100802514 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2221 08 49911852 49947921 Dod08g2221 08 49911852 49947921 ECH