Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2126 ATGGCCATCAAAGCAACACTCTCCAGATCTCACTACATTGCCAAAAGTCTTGCCTCATCACCAACCATTCGCCCTGGGACCTTACACTTCCATGAATATGTGGATTATCGTATATTTGGCTACAACATGAAACTTCAGTTTCATCACTATGTTCGCATGGGTGATCACTGCAAAAGATCATTGATCCTTGATACGATTGCAATATGGAACTCAAGATTTAGGGGATTAGATACATCTCTGTGTATCTTTGGAATTTCTCCGATTAAAACAAATTCAATTATTCCATTTTTCCATGGCTCCAAATGGTTTCCTTGTAGCGAACCAACAAATCATATTTTGGAACGTGCCAAAGATGTGAAGACAATATTTACTGCTATAACCGTTGGCTTTTTCTTTCACTCAAACTTGGGTGAACCAAGGACAATTCCTTCAGATTCAATGTGTCCGACTCTGAATATTGGTGATTGTATTTTGATGGAAAAGGTTTCCTTCTTCTTCAGAAAGCCTAGTGTTTCAGATGTAGTAGTATTTAATGCGCCACCAGTTTTACAGGCTTATGGATATGATCCTGATTATCCATTTGTAAAGAGAATTGTGGCTAAGGCAGGGGACCTAGTTGAAATTCGTGATAGAAAACTATTTGTCAATGGTATCCCTCGTGAAGAGAAATTCATATTGGAGCCAATTGCTTATGAAATGGATCCACTGGTTGTGCCAGAAGGTTTTGTCTTTGTGCTTGGAGATAATTGTAATAATAGTTTTGACTCACACTACTGGGGTCCACTTCCCATCCAGTACATTATTGGCAGGTTCATGTTTAGATACTTTCTTCCATCTGAAGAATCTGACTCCCCTTCATAA 861 0.3879 MAIKATLSRSHYIAKSLASSPTIRPGTLHFHEYVDYRIFGYNMKLQFHHYVRMGDHCKRSLILDTIAIWNSRFRGLDTSLCIFGISPIKTNSIIPFFHGSKWFPCSEPTNHILERAKDVKTIFTAITVGFFFHSNLGEPRTIPSDSMCPTLNIGDCILMEKVSFFFRKPSVSDVVVFNAPPVLQAYGYDPDYPFVKRIVAKAGDLVEIRDRKLFVNGIPREEKFILEPIAYEMDPLVVPEGFVFVLGDNCNNSFDSHYWGPLPIQYIIGRFMFRYFLPSEESDSPS* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2126 286 PANTHER SIGNAL PEPTIDASE I 1 110 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod08g2126 286 TIGRFAM sigpep_I_bact: signal peptidase I 119 276 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod08g2126 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 194 206 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod08g2126 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 135 151 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod08g2126 286 PRINTS Bacterial leader peptidase 1 (S26A) family signature 238 257 IPR000223 GO:0006508|GO:0008236|GO:0016020
Dod08g2126 286 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 110 - -
Dod08g2126 286 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 116 284 - -
Dod08g2126 286 CDD S26_SPase_I 138 270 IPR019533 GO:0004252|GO:0006465
Dod08g2126 286 Gene3D Umud Fragment, subunit A 144 276 - -
Dod08g2126 286 ProSitePatterns Signal peptidases I serine active site. 144 151 IPR019756 GO:0004252|GO:0016021
Dod08g2126 286 Pfam Signal peptidase, peptidase S26 119 275 IPR019533 GO:0004252|GO:0006465
Dod08g2126 286 ProSitePatterns Signal peptidases I signature 3. 243 256 IPR019758 GO:0004252|GO:0016021
Dod08g2126 286 SUPERFAMILY LexA/Signal peptidase 135 276 IPR036286 -
Dod08g2126 286 PANTHER SIGNAL PEPTIDASE I 116 284 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2126 Dod-Chr8 48901627 48904445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2126 147 276 MADS-box Gene Family AT1G29960 32.331 9.96e-13 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2126 K03100 - gmx:100817525 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2126 08 48901627 48904445 Dod08g2126 08 48901627 48904445 ECH