Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2067 ATGGAGTTGTTCAAGTTAAACAAATCCCCTTCCTCGGATGATCAAATGAAAATGATGTTGATGATGATGCAACTCCCTGAGTTCTCTTCATCTCAAGATAACAAAGAATTAGCAACTTTTCAACCACCAAAGTTCTCTTGTGAAGCCACCACAACCAGCACCAATACTACACACACCAATATGCCACTACCAAATTCAATAGATGATAATTACTCTCTTATACCAGCTTGGTCATCACCACACACTAATTTTAATCGCTTACCATCACCTACAACAACAAATTTCACTAACAATTACCCTTCTACTACTACCCCTACGATTAATCAACAAGATCACCAAACCCCATCAAATATTTCAAACAATTTTGCCAAAGTTTCCTTAGAGAAACACAAATCGATGGATTCAATGAGGGAAATGATATTTAGAATGGCATCTATGCAACCAATACACATTGACCCCGAGTCAGTGAAGCCACCAAAGAGGAGGAGCATGAAGGTCTCAAAGGACCCTCAAAGTGTTGCAGCAAGGCACAGAAGGGAAAGGATAAGTGAGAGGATAAGGATACTGCAGAGGCTGGTCCCTGGAGGGACCAAGATGGACACTGCTTCTATGTTGGATGAAGCCATTCACTATGTAAAGTTCCTCAAGACACAGGTTCAGTCACTTGAACGAGTTGCCAAGGATAATAGTAGTGGGTTCTTCCCTGTGTTTATGTCTAGTGGGAGTAGTACTAGCCCTGATGGCACCCCTTTTCTTTCTTTACCAAAATCTTACCAAGCTTCTTCTGAAGTTCAAAGTGTAGATGAGCATTTGAGAGATGATGCATAA 828 0.4094 MELFKLNKSPSSDDQMKMMLMMMQLPEFSSSQDNKELATFQPPKFSCEATTTSTNTTHTNMPLPNSIDDNYSLIPAWSSPHTNFNRLPSPTTTNFTNNYPSTTTPTINQQDHQTPSNISNNFAKVSLEKHKSMDSMREMIFRMASMQPIHIDPESVKPPKRRSMKVSKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERVAKDNSSGFFPVFMSSGSSTSPDGTPFLSLPKSYQASSEVQSVDEHLRDDA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2067 275 MobiDBLite consensus disorder prediction 240 265 - -
Dod08g2067 275 Gene3D - 164 231 IPR036638 GO:0046983
Dod08g2067 275 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 5 243 - -
Dod08g2067 275 Pfam Helix-loop-helix DNA-binding domain 175 215 IPR011598 GO:0046983
Dod08g2067 275 MobiDBLite consensus disorder prediction 240 275 - -
Dod08g2067 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 225 IPR036638 GO:0046983
Dod08g2067 275 MobiDBLite consensus disorder prediction 151 178 - -
Dod08g2067 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 243 IPR045843 GO:0003700|GO:0006355
Dod08g2067 275 SMART finulus 172 221 IPR011598 GO:0046983
Dod08g2067 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Dod08g2067 275 MobiDBLite consensus disorder prediction 154 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2067 Dod-Chr8 48139857 48140684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g2067 74 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 55.866 1.64e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod08g2067 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2067 - - gmx:100788158 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g2067 08 48139857 48140684 Dod08g2067 08 48139857 48140684 ECH