Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g2053 ATGTTGGGCAAGATTAAGAGCCGGTTTGAAGGCGATGATTATGTTTATAAGTCATTTCTTGATATATTGAAGATGCACAAAAACGAAGGGAAGTCTATCTCCGAGGTTTATCAGGAGGTGGTCGCACTTTTCCAGGGCCATGAAGATCTTCTTGAGGAGCTCAACCATTATCTTCTTGATACACCATTTACAGCTTCTGCTATTGATGAATTTGCTCAAAATTCTATGCTTCATGATATGAGCTCTGCAAAACCAACTAGAGAAAGGACCATGGACTCTCGTGGTGAGTTTGAATGGACCATGGATGATAGAGCAAAACGGAGAAAAAGCCTTGCGCTTGATGATGCTGAATCCAGTAAGAAGGAAAATTGA 372 0.4086 MLGKIKSRFEGDDYVYKSFLDILKMHKNEGKSISEVYQEVVALFQGHEDLLEELNHYLLDTPFTASAIDEFAQNSMLHDMSSAKPTRERTMDSRGEFEWTMDDRAKRRKSLALDDAESSKKEN* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g2053 123 MobiDBLite consensus disorder prediction 82 98 - -
Dod08g2053 123 PANTHER SIN3A, ISOFORM G 4 89 - -
Dod08g2053 123 Gene3D Paired amphipathic helix 2 58 IPR036600 GO:0006355
Dod08g2053 123 MobiDBLite consensus disorder prediction 79 98 - -
Dod08g2053 123 ProSiteProfiles PAH domain profile. 1 61 IPR003822 GO:0006355
Dod08g2053 123 PANTHER SIN3B-RELATED 4 89 IPR039774 GO:0003714
Dod08g2053 123 Pfam Paired amphipathic helix repeat 15 58 IPR003822 GO:0006355
Dod08g2053 123 SUPERFAMILY PAH2 domain 2 58 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g2053 Dod-Chr8 47933818 47935689 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod08g2053 PAH 8.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g2053 K11644 - ccaj:109792823 112.079