LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g2010	ATGCTTCTTCTCCTTTTCCTATGTTCAATGATACTTGCACCATTCTCTATTCTAGCTCAAATTAATGTTGGTGTTAAAGGCCAAAACAGAAGCAATATAAAAATTGGTGACACTCTTTCTGCAGAAAATAGCAACTCCTCATGGGTGGTTTCACCTTCTGGTGACTTTGCTTTTGGCTTTCTCCCACTTCAGGACACTGATTTTTTCTTGCTTTCAATATGGTATGCCAAGATTCCAGAGCAGACCATAGTATGGTATGCCAATGGAGACAATCCTGCACCAAAGGGCTCAAAAGTGGAGCTTAATGCTGATGATGGCCTAATTCTTAGTGCCCCAAATGGTGACCAGTTATGGAAAACTGTGAACCTTACTGGCAAAGTTGCAAATGGATTCTTGAACAACACTGGCAACTTTGTGCTTAATGGTCGTGACTCTGGCTCTGTGTGGGAGACTTTCAAGAATCCTAAGGACACCTTGTTGCCCTCACAGATTCTAGAGATTGGTGGAAAGCTTTCTTCAAGATTCTTGGAGTCAAATTTCTCTAGGGGAAGGTTTGAGCTCCTCCTTCAAGGAGATGGTATTCTTTCTATTCATGCTTTAAACTTGCCATCTGATTATGTCAATGAAAACCTCTATGAAGCTCTAAACACTGAACCTAATGCTACAACACGTGGAATTCGAGTGGTCTTTGATTCATCAGGATACTTGTACATCCTTAGAAAGACCAATGGAAAATTCAACTTCTCAAATCAACAGACTGGAGTCTCTACCGCAGATTCTTATCTTAGAGCAACTCTCAACATTGATGGTGTCTTTACTTTCTATCAATATCCAAAGAATTCCCTTGGTGGTGATGGTTGGAGCCCAGTGTGGTCTCAGCCGGATAATATCTGTCTGACTAGAGCTGCTACTGGAGGTAGTGGCATTTGTGGATTCAATAGTTACTGCACAATGGGAAATGACAAAAGGGCTACTTGTCAGTGCCCAACAGGGTACTCTCTAGTTGATCCTAATGATCCTTATGGTAGCTGCAAACCAGATTTCATTCTGGGATGTGCAGAAGATGAGCTCATAAAGGGTAAAGATGAGTATGATTTGGAGGAGTTATTAAATTCTGATTGGCCTCTCTCAGAATATCTGGTTCTAAGTCCTTTTACTGAAGAAGAATGCAAACAATCTTGTTTGGAAGATTGTATGTGTGCAGTTGCCATTTTCGAATCAGATGGCAGCTGCCTGAAGAAGAAGTTACCACTTTCAAATGGAAGAGTTGATCCTGCAATTAATGATGGCAGAAAGACCTTCATGAAGGTGGGGAAAGATAATTCCTCCTTTGTTATCCCACTTCAACCATCCATTGTGCACAAGAACAGGAAAACTTTGATTTTGGTTGGTTCAGTGCTTTTGGGAAGCTCAGCTTTTGTCAATATCATATTGATTGGAGCCATCTGCTTGAGCTTTTCCTTCATTTTTCGGTACAAGAAGAAGGCTCCAAGAGGTGACAATGCCGTCGAAACCAATCTGCGTTGCTTCACTTACAAGGAGCTTGAAGAAGCTACTAATGACTTTCAGAAAGAGCTAGGAAGGGGATCTTTTGGTGTTGTCTATGAAGGAGTCATAGATATGGCCTCCTCCAAAACCCTTGTGGCAGTCAAGAAGTTGAACAGCTTTGTATTGCAAGAGGTTGAGAAGGAATTCAAGAATGAGTTGAATGTCATTGGTCTCACACACCACAAAAACTTGGTTAGATTGATTGGATTTTGTGAGGCTGGATCAGAAAGGTTGCTGGTTTATGAGTACATGAGCAATGGAACTCTTGCGAGACTTCTTTTCAATGGGGTGACCAAACCAAGTTGGAAACTGAGGCTAGACATTGCATTTGGTATAGCAAGAGGACTTGCATATATGCATGAAGAGTGCAGCACACAGATTATCCACTGTGACATAAAGCCTCAGAACATACTCCTTGACAACTACTATAATGCAAGGATTTCTGACTTTGGTTTGGCCAAGCTTTTGAAGATGAATCAAAGCAGAACCAATACTGCAATAAGAGGAACAAAAGGGTATGTTGCAGTTGAATGGTTTAAAAGTATGCCAATTACAGCCAAAGTTGATGTCTATAGCTATGGAGTGCTGCTGCTCGAGATCATTTGCTGCAGGAGATGTGTGGAAATGCAGTCATCACAAGATGAGAAAGCAATCTTAACTGATTGGGCTTATGATTGCTACACAGGTGGTGCTATTGATGCTTTGGTTAAAGATGACAAGGAGGCATTGGATGATAAAGGGAGCTTGGAGAAGTTGGTAATGATTGCCATTTGGTGTGTTCAAGAGGATCCAAATCTTAGGCCTACCATGAGAAAGGTGACACAGATGCTTGAAGGTGTTGTTCAAGTGCAAGCACCACCATACCCACCTTCATCTAGTGCTCAGAGTTGA	2439	0.4157	MLLLLFLCSMILAPFSILAQINVGVKGQNRSNIKIGDTLSAENSNSSWVVSPSGDFAFGFLPLQDTDFFLLSIWYAKIPEQTIVWYANGDNPAPKGSKVELNADDGLILSAPNGDQLWKTVNLTGKVANGFLNNTGNFVLNGRDSGSVWETFKNPKDTLLPSQILEIGGKLSSRFLESNFSRGRFELLLQGDGILSIHALNLPSDYVNENLYEALNTEPNATTRGIRVVFDSSGYLYILRKTNGKFNFSNQQTGVSTADSYLRATLNIDGVFTFYQYPKNSLGGDGWSPVWSQPDNICLTRAATGGSGICGFNSYCTMGNDKRATCQCPTGYSLVDPNDPYGSCKPDFILGCAEDELIKGKDEYDLEELLNSDWPLSEYLVLSPFTEEECKQSCLEDCMCAVAIFESDGSCLKKKLPLSNGRVDPAINDGRKTFMKVGKDNSSFVIPLQPSIVHKNRKTLILVGSVLLGSSAFVNIILIGAICLSFSFIFRYKKKAPRGDNAVETNLRCFTYKELEEATNDFQKELGRGSFGVVYEGVIDMASSKTLVAVKKLNSFVLQEVEKEFKNELNVIGLTHHKNLVRLIGFCEAGSERLLVYEYMSNGTLARLLFNGVTKPSWKLRLDIAFGIARGLAYMHEECSTQIIHCDIKPQNILLDNYYNARISDFGLAKLLKMNQSRTNTAIRGTKGYVAVEWFKSMPITAKVDVYSYGVLLLEIICCRRCVEMQSSQDEKAILTDWAYDCYTGGAIDALVKDDKEALDDKGSLEKLVMIAIWCVQEDPNLRPTMRKVTQMLEGVVQVQAPPYPPSSSAQS*	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g2010	812	Gene3D	Phosphorylase Kinase; domain 1	493	599	-	-
	Dod08g2010	812	Gene3D	-	28	153	IPR036426	-
	Dod08g2010	812	ProSiteProfiles	Protein kinase domain profile.	520	797	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g2010	812	Pfam	Protein kinase domain	523	791	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g2010	812	SUPERFAMILY	alpha-D-mannose-specific plant lectins	69	198	IPR036426	-
	Dod08g2010	812	Gene3D	-	154	281	IPR036426	-
	Dod08g2010	812	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	20	809	-	-
	Dod08g2010	812	ProSiteProfiles	Bulb-type lectin domain profile.	30	153	IPR001480	-
	Dod08g2010	812	Pfam	D-mannose binding lectin	82	166	IPR001480	-
	Dod08g2010	812	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RLK1	20	809	-	-
	Dod08g2010	812	ProSitePatterns	Protein kinases ATP-binding region signature.	526	552	IPR017441	GO:0005524
	Dod08g2010	812	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	643	655	IPR008271	GO:0004672\|GO:0006468
	Dod08g2010	812	Gene3D	Transferase(Phosphotransferase) domain 1	600	804	-	-
	Dod08g2010	812	PIRSF	SRK	1	812	IPR024171	GO:0004674
	Dod08g2010	812	CDD	STKc_IRAK	526	795	-	-
	Dod08g2010	812	SUPERFAMILY	Protein kinase-like (PK-like)	502	794	IPR011009	-
	Dod08g2010	812	SMART	blect_4	30	155	IPR001480	-
	Dod08g2010	812	SMART	serkin_6	520	793	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g2010	Dod-Chr8	47290632	47293270	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g2010	506	812	Receptor kinase-like Gene Family	AT1G60800	40.000	2.30e-71	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Dod08g2010		Pkinase	2.9e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g2010	-		-	pvu:PHAVU_010G032000g	1111.67