Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1982 ATGCAACAAATAGGGTATGCAACAATGCCTTTGTATCATCCATCTAAAGATGAAGCTGTGTTGTTTGATCTAGATACCACCTTGTTGAAAGGTGGTGTTTTGGATCTGAAGTTGATGATTGAGGAGTTGGAGTCAAACATTGATGATGTTCCTTCAGTGTTCATTTGTCCAATCTCACTTGAGCCAATGTTAGACCCAGTTACCCTTTGCACAGGTCAGACCTATGACAGATCCAACATCCTCAAATGGTTCTCACTTGGCCACAACACTTGTCCCACAACAATGCAGGAGCTTTGGGATGGCAATTCTGTCACACCAAACAGGACCTTAAGCCACTTGATCCTTACTTGGTTCACTCACAAGTACTTTGACATGAAGAAGAGGCTTGAGGATGTTCAAGGGAGAGCCTTGGAACTCTTGGACACCCTCAAGAAGGTAAAGGGTCAAGCTAGAGTGAAAGCACTAAAGGGTCTTCACCAACTTGTTGCTTCTCATGTTCCTGCAAGGAAAGCAGTTGCACAACATGGTGGGGTTGCTTTGGTTTCCTCTTTGCTGGGGCCTTTCACTTCACATGCTGTTGGGTCAGAAGCAATTGGGATAATTGTGAATTTGGATTTGAGTTCAGAGTTGAAGAGAAGGAATTTGATGCATCCTGCAAAGGTGTCACTAATTGTTGATATAATGAATGAGGGGACTATTGAGACTAAGATGAATTGTGCCAAGTTAATTGAGATGTTGTTGATGGAAGGGAATGATGGTTCTGAGGCTGATGAGATTGTTACAAGCTTGAGCCTTTTGGTGGGGTTGTTGAGGTTAGTAAGGGACAAGAAACACCCAAATGGGGTGTTAACTGGCCTCATATTACTCAAGGCTATATGTTCACATGAATCAGTTAGAAGCTCAGTGGTAAGCATAGGTGCAGTTCCTCAATTGATTGAGCTATTGCCAAGTTTGAACAATGAGTGCTTAGAGATAGCACTCTATATTCTAGAGGTGTTATCAACACTTCCTGAGGGCAGGTTGGCCTTGAAAAAATGTCCAAACATTGTTCCAAATGTGGTCAAGTTGTTGATGAGAGTGTCAGAGAATTGCACACAGTTTGCACTTTCAATATTGTTGGCTATCTACAAGCTTTCCCCTGAAGAATGTGCATCACAGGCAGTGGAGGCTGGTTTGGCACCAAAGCTATTGCTAGTGATTCAGAGTGGATGCAATCCAGTGTTGAAGCAGATGTCTTCTGAGTTCTTGAAAATGTGCAGTTTGAATTACTCTTCTAATATCTTGATTTCCAAGTGTATGCTTACAACAACAATACAATGA 1320 0.422 MQQIGYATMPLYHPSKDEAVLFDLDTTLLKGGVLDLKLMIEELESNIDDVPSVFICPISLEPMLDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDGNSVTPNRTLSHLILTWFTHKYFDMKKRLEDVQGRALELLDTLKKVKGQARVKALKGLHQLVASHVPARKAVAQHGGVALVSSLLGPFTSHAVGSEAIGIIVNLDLSSELKRRNLMHPAKVSLIVDIMNEGTIETKMNCAKLIEMLLMEGNDGSEADEIVTSLSLLVGLLRLVRDKKHPNGVLTGLILLKAICSHESVRSSVVSIGAVPQLIELLPSLNNECLEIALYILEVLSTLPEGRLALKKCPNIVPNVVKLLMRVSENCTQFALSILLAIYKLSPEECASQAVEAGLAPKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSSNILISKCMLTTTIQ* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1982 439 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 30 438 - -
Dod08g1982 439 Pfam U-box domain 50 120 IPR003613 GO:0004842|GO:0016567
Dod08g1982 439 Gene3D - 129 436 IPR011989 -
Dod08g1982 439 ProSiteProfiles U-box domain profile. 49 124 IPR003613 GO:0004842|GO:0016567
Dod08g1982 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 128 IPR013083 -
Dod08g1982 439 SUPERFAMILY ARM repeat 139 267 IPR016024 -
Dod08g1982 439 SUPERFAMILY ARM repeat 259 425 IPR016024 -
Dod08g1982 439 CDD RING-Ubox_PUB 54 96 IPR045210 -
Dod08g1982 439 PANTHER WDSAM1 PROTEIN 30 438 IPR045185 GO:0061630
Dod08g1982 439 SUPERFAMILY RING/U-box 38 119 - -
Dod08g1982 439 SMART Ubox_2 53 117 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1982 Dod-Chr8 46943137 46944664 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1982 9 439 U-box Gene Family AT3G49810 59.780 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1982 - - gmx:100803878 637.876