Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1965 ATGAGCTTTGATGATACCTCCAACACAGGTCTAAGACTTGGTCTTGGTCTTGGTCTTGGCCTCCATGATCAATCAGAGAATTGCATGAAGATAGATGATCAAAGGAAGGGAGAAAGCCAGAAGAAAAAGGAGGATGATCAATCAAAATGTAACAATAATAAGGTATATCCATCTCTTACATTAGATTTAGGACCAATTGATGATGATGAAGCAAATGATCATCAACCAGCTTCAAAGATTGAAGCCTCTTCTCCAAGTGCAGTGTCTTCATTTTCCAACTCTTCTAGCAGCAAGAAGGAGAGAGATCAGTTATTGGGTGAAGAGTTTGAGGTTGAGGTTGAGAAGGTTCCATCAAGGTCACGTGATGTTGATGGAGATGGCAACCCAAGGAAGAAACTTAGGCTCAGTAAAGAACAATCTGCAGTCTTAGAGGAAAACTTCAAAGAGCATTCTACTCTCAATCTGAAGCAAAAGCAAGAATTGGCAACACAGCTAAATCTGCGGGCGAGACAAGTAGAGGTGTGGTTCCAAAACAGGAGAGCCAGGACAAAACTTAAGCAAACAGAATCGGATTGTGAGTTACTGAGGAAGTGCTGTGAAACTCTAACAGAAGAGAACAACAGGCTTCAAAAGGAGCTGCAAGAACTCAGATCAATGCAAACAATAGCCTCTGCAGGACCCTTATACATGCAGGTTCCTGCAGCCACCCTTACCATATGCCCTTCTTGTGAGAGGATTTGTGGTGGTAATAACAGCAATAATGGCCCCTCACCAAAGACAACTTTGCTCATTGGTTCAAAGAGCCATCATCACTTCTATAAAAATAACTACCCATTCACCCACTCATCATCCGCAAAATGCTAG 864 0.4225 MSFDDTSNTGLRLGLGLGLGLHDQSENCMKIDDQRKGESQKKKEDDQSKCNNNKVYPSLTLDLGPIDDDEANDHQPASKIEASSPSAVSSFSNSSSSKKERDQLLGEEFEVEVEKVPSRSRDVDGDGNPRKKLRLSKEQSAVLEENFKEHSTLNLKQKQELATQLNLRARQVEVWFQNRRARTKLKQTESDCELLRKCCETLTEENNRLQKELQELRSMQTIASAGPLYMQVPAATLTICPSCERICGGNNSNNGPSPKTTLLIGSKSHHHFYKNNYPFTHSSSAKC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1965 287 Coils Coil 185 222 - -
Dod08g1965 287 Gene3D - 124 192 - -
Dod08g1965 287 SMART halz 186 232 IPR003106 GO:0006355|GO:0043565
Dod08g1965 287 Pfam Homeodomain 130 184 IPR001356 GO:0003677
Dod08g1965 287 MobiDBLite consensus disorder prediction 77 99 - -
Dod08g1965 287 PANTHER - 7 285 - -
Dod08g1965 287 SMART HOX_1 128 190 IPR001356 GO:0003677
Dod08g1965 287 CDD homeodomain 129 187 IPR001356 GO:0003677
Dod08g1965 287 MobiDBLite consensus disorder prediction 1 132 - -
Dod08g1965 287 MobiDBLite consensus disorder prediction 100 132 - -
Dod08g1965 287 MobiDBLite consensus disorder prediction 26 50 - -
Dod08g1965 287 ProSitePatterns 'Homeobox' domain signature. 161 184 IPR017970 GO:0000981|GO:0006355
Dod08g1965 287 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 7 285 - -
Dod08g1965 287 SUPERFAMILY Homeodomain-like 127 195 IPR009057 -
Dod08g1965 287 Pfam Homeobox associated leucine zipper 186 219 IPR003106 GO:0006355|GO:0043565
Dod08g1965 287 ProSiteProfiles 'Homeobox' domain profile. 126 186 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1965 Dod-Chr8 46609818 46612221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1965 1 285 Homeobox Transcription Factor Family AT2G22800 46.557 9.14e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod08g1965 Homeodomain 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1965 K09338 - gmx:100797650 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1965 08 46609818 46612221 Dod08g1965 08 46609818 46612221 ECH