Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1964 ATGGAGGAATACACTAATAGTAATAATCACTTGAGCGAAAACACAGGTCCAAGTACAAGGCCTAGTTTCTTGTACTCTTCAACTAATAGTGCTTCTTCTTCTCTTGGAGTGTTTGGAAGAATTACCAACAACAACAACAACAGTGGTGGAAACAACCATCATCATAATCATCATAATCATAATCAAGTTCCAATCAACCCCTTTCATCTTCAACCTGGTGGTGGATCAGATCATCATCATCATCATCATCAACACTGCTTCCAATCTGATGATCAGGTTCAACCGCACCCTGCTGTGAAGACTGAAGCCAGCACCTCTCATCAGCTTCACACACCAATTCTCCATCACTACCCTTTGTTGAGAGGAAATCTTCATAGCAGCAGCACTATGCATCATCCCCACCATCAGAGCCAGCAGCACCACCAGCAAGGAGGGAACCAAAGCCCCAGTGAAGTTGAAGCCATCAAAGCTAAAATCATTGCTCACCCTCAGTGCTCCAATCTCTTAGAAGCTTACATGGATTGCCAAAAGGTTGGAGCTCCACCGGAAGTGGTGGCGCGTTTGGTGGCGGCGAGGCAGGAATTTGAGGCACGGCAACGATCTTCAGTTAGCTCAAGGGAAAGTTCGAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTGTGAAGTACCGAGAGGAATTAACAAGGCCTATACAAGAAGCTATGGATTTCATGCGGAGGATAGAAACACAGCTAAATATGCTTTGCAATGGACCCGTAAGGATCTTCTCAGATGATAAATGTGAAGGCGTTGGTTCATCGGAAGATGATCAAGACAATAGTGGCGGAGAAACAGAACTGCCGGAGATTGATCCACGAGCAGAAGACCGTGAACTCAAGAACCACTTGCTGAGGAAGTATAGTGGTTACTTGAGCAGCCTTAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGAAAACTGCCCAAAGAAGCTAGGCAAAAGCTACTCAATTGGTGGGAATTACACTATAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACCGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGCCTGCATGCTCAGAACGCAACACTCTACATGGATGGTCACTACATGGCTGATGGTCACTACCGTCTAGGGCCATGA 1245 0.4506 MEEYTNSNNHLSENTGPSTRPSFLYSSTNSASSSLGVFGRITNNNNNSGGNNHHHNHHNHNQVPINPFHLQPGGGSDHHHHHHQHCFQSDDQVQPHPAVKTEASTSHQLHTPILHHYPLLRGNLHSSSTMHHPHHQSQQHHQQGGNQSPSEVEAIKAKIIAHPQCSNLLEAYMDCQKVGAPPEVVARLVAARQEFEARQRSSVSSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCEGVGSSEDDQDNSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHAQNATLYMDGHYMADGHYRLGP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1964 414 ProSitePatterns 'Homeobox' domain signature. 354 377 IPR017970 GO:0000981|GO:0006355
Dod08g1964 414 MobiDBLite consensus disorder prediction 265 293 - -
Dod08g1964 414 Gene3D - 313 386 - -
Dod08g1964 414 SMART ELK_2 296 317 IPR005539 GO:0003677
Dod08g1964 414 ProSiteProfiles ELK domain profile. 296 316 IPR005539 GO:0003677
Dod08g1964 414 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 406 - -
Dod08g1964 414 Pfam ELK domain 296 317 IPR005539 GO:0003677
Dod08g1964 414 MobiDBLite consensus disorder prediction 43 108 - -
Dod08g1964 414 MobiDBLite consensus disorder prediction 90 108 - -
Dod08g1964 414 CDD homeodomain 328 380 IPR001356 GO:0003677
Dod08g1964 414 SUPERFAMILY Homeodomain-like 317 390 IPR009057 -
Dod08g1964 414 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 406 - -
Dod08g1964 414 SMART KNOX1_2 153 197 IPR005540 GO:0003677|GO:0005634
Dod08g1964 414 MobiDBLite consensus disorder prediction 123 152 - -
Dod08g1964 414 Pfam KNOX1 domain 154 196 IPR005540 GO:0003677|GO:0005634
Dod08g1964 414 Pfam KNOX2 domain 209 254 IPR005541 GO:0003677|GO:0005634
Dod08g1964 414 Pfam Homeobox KN domain 336 375 IPR008422 GO:0003677|GO:0006355
Dod08g1964 414 MobiDBLite consensus disorder prediction 123 150 - -
Dod08g1964 414 SMART KNOX2_2 204 255 IPR005541 GO:0003677|GO:0005634
Dod08g1964 414 ProSiteProfiles 'Homeobox' domain profile. 316 379 IPR001356 GO:0003677
Dod08g1964 414 SMART HOX_1 318 383 IPR001356 GO:0003677
Dod08g1964 414 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1964 Dod-Chr8 46592217 46601646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1964 84 414 Homeobox Transcription Factor Family AT4G08150 69.706 2.68e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod08g1964 KNOX2 4.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1964 - - gmx:100807602 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1964 08 46592217 46601646 Dod08g1964 08 46592217 46601646 ECH