Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1947 ATGGGTATCTGCATCTCCATTGCATCTTCAGAGATTCATGGGGCCCCTAAAGAAGTTCATGATGAGAATGTGATAACAATTGAAGCTAGCAAAGTTCTAAATGGTAATCAGAGACTTTGTTCTGTTCACTCTAAACAAGGTACCAAAGGACTCAACCAAGATGCTGCCTCTATTCACCAGGATTATTGGATGGAAGATGGAGCATTTTGTGGTGTTTTTGATGGGCATGGAAGGAATGGACATATAGTGAGCAACATAGTTAACGGCCGTTTGTCTTCACTCATACTTAGCCAAAAGAATGCTCTCGCAAAAATTGATAACATAGAAAATGGTAATGACAACACCACAAGCCACGTTGGCACAGTGAAAGATGACAAGGATCCAAAGAGTATTCAGAAATGGAAAGAAGCCATTGTTAGTGCTTTTAAGGTGATGGACAAGGAGGTGAAGCTACAAGAGAATCTAGATTGCTCTTGCAGTGGAACTACTGCTATAGTTGTCATAAGACAGGGTGAAGGCCTTCTAATTGCTAATTTGGGTGACTCAAGAGCTGTATTGGGAACAATCTGTGACAAAGAACTCTCAGCCATTCAGTTGACCACAGATTTGAAGCCTGGATTACCTAGTGAAGCAGAACGAATAAGGAGGTCCAATGGTTGTGTATATGCACTAAAGGAAGAACCGCATATCCAGAGGGTGTGGCTACCCAACAATGAGAACTCGCCAGGACTAGCCATGTCTCGAGCTTTTGGAGATTTTGTGCTCAAGGATCATGGTGTTATTGCCATCCCAGATGTTTCATATCGCCCTCTAACACCAAGCGATCAGTTTGTTGTTCTTGCAAGTGATGGGGTGTGGGATGTTCTAAGCAACATTGAGGTTGCATCCATAGTGTGGACGACAGACACTGAAGAGGAAGCAGCTATGGCAGTAGTGGAAGCAGCCAATGCTGCATGGAAAAGGAAGTATCCTTCTTCTAAGGTTGATGACTGCACTGTGGTTTGCCTCTTCCTGCAGCAAAAACAACCGAAACTAGGGCATATGAAAAGTATAATGTTACATTAG 1065 0.43 MGICISIASSEIHGAPKEVHDENVITIEASKVLNGNQRLCSVHSKQGTKGLNQDAASIHQDYWMEDGAFCGVFDGHGRNGHIVSNIVNGRLSSLILSQKNALAKIDNIENGNDNTTSHVGTVKDDKDPKSIQKWKEAIVSAFKVMDKEVKLQENLDCSCSGTTAIVVIRQGEGLLIANLGDSRAVLGTICDKELSAIQLTTDLKPGLPSEAERIRRSNGCVYALKEEPHIQRVWLPNNENSPGLAMSRAFGDFVLKDHGVIAIPDVSYRPLTPSDQFVVLASDGVWDVLSNIEVASIVWTTDTEEEAAMAVVEAANAAWKRKYPSSKVDDCTVVCLFLQQKQPKLGHMKSIMLH* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1947 354 CDD PP2Cc 38 338 IPR001932 -
Dod08g1947 354 ProSiteProfiles PPM-type phosphatase domain profile. 39 338 IPR001932 -
Dod08g1947 354 Pfam Protein phosphatase 2C 112 313 IPR001932 -
Dod08g1947 354 SUPERFAMILY PP2C-like 28 339 IPR036457 -
Dod08g1947 354 PANTHER ALPHABET, ISOFORM E-RELATED 1 342 - -
Dod08g1947 354 SMART PP2C_4 29 336 IPR001932 -
Dod08g1947 354 Gene3D - 21 341 IPR036457 -
Dod08g1947 354 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1947 Dod-Chr8 46296987 46299580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1947 1 342 PP2C-type Phosphatase Gene Family AT5G26010 49.003 2.07e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1947 - - aip:107605550 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1947 08 46296987 46299580 Dod08g1947 08 46296987 46299580 ECH