Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1920 ATGACTCCTCTTTCTCTGAACCCACCTGCAGGTCCTTCCATGCAAGGTCAAAACCATCTCTTCAATATTCCTCCTAATAATCAGGACTCATCAACTTCTTCTCTCTCATGCCGTACCTTGTTTAACATACTTGATCGAAGGCAAACCTTAGAAGTTGGAGAGTTAAGAGTAAAGGATCAACAGGATGATGATGGATCACCAAGCAGCAAAAACAATCAAGTTTGCAATTCATCCTTCAATGTTTCACCTCAGCCAGTTATGGAGGAGCCAAGCAGATCATCATGTGACCATAATTTACCCTTGTACAAAGTGGGGGAGCAAGAAGATAGCAAAAACGGTCACGGGTCTGCAAAATGGATGCCTTCAAAGATGAGGTTGATGAGAAAAATGATGATGAGACCGAGTAGCAGTCCAGCCAATAATGAGGACAAATCACTCATTAATACTACTCCAAGCCCAAGATTCCAAAATCAAGGGCACAGCCAAAGAAGCCCTCGTAACAACAGCACTGGCACCACTAGGGTTTGTTCGGATTGCAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAATGGTCCTAAGTCGCTTTGCAATGCCTGTGGCATTAGACAGAGGAAAGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTAGCCACTTCCATGGATAATGCAACATCTACAAAGACCAGAGTACATAACAAGGAGAAGAAGTCTCGTACGGGCCACTTTACACAGTTAAAAAATAAGTGCAAATCCCTCTACTACTACTGCTACTGCTGCAACTGCAAGCTCATCTCATCACCAACAAGGGGAAAAGAAGAAGCTTGA 834 0.4412 MTPLSLNPPAGPSMQGQNHLFNIPPNNQDSSTSSLSCRTLFNILDRRQTLEVGELRVKDQQDDDGSPSSKNNQVCNSSFNVSPQPVMEEPSRSSCDHNLPLYKVGEQEDSKNGHGSAKWMPSKMRLMRKMMMRPSSSPANNEDKSLINTTPSPRFQNQGHSQRSPRNNSTGTTRVCSDCNTSTTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGLATSMDNATSTKTRVHNKEKKSRTGHFTQLKNKCKSLYYYCYCCNCKLISSPTRGKEEA* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1920 277 Gene3D - 171 246 IPR013088 GO:0006355|GO:0008270
Dod08g1920 277 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 253 - -
Dod08g1920 277 MobiDBLite consensus disorder prediction 57 99 - -
Dod08g1920 277 SMART GATA_3 170 228 IPR000679 GO:0006355|GO:0043565
Dod08g1920 277 MobiDBLite consensus disorder prediction 133 175 - -
Dod08g1920 277 MobiDBLite consensus disorder prediction 66 91 - -
Dod08g1920 277 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Dod08g1920 277 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
Dod08g1920 277 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Dod08g1920 277 MobiDBLite consensus disorder prediction 134 175 - -
Dod08g1920 277 CDD ZnF_GATA 175 212 IPR000679 GO:0006355|GO:0043565
Dod08g1920 277 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 170 210 - -
Dod08g1920 277 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 15 253 - -
Dod08g1920 277 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1920 Dod-Chr8 45855779 45858350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1920 113 205 C2C2-Gata Transcription Factor Family AT4G26150 48.454 7.15e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dod08g1920 GATA 7.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1920 - - gmx:100780326 251.906