LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g1919	ATGCCATCTTGGTGGGGAAAGTCTTCATCCAAAGAGGTGAAGAAGAAGAAGGTAAAAAGGGAAAGTATTATTGATACAATACAACAGAAATTTAAGAATGCTTCTGAAAAGAAGTGCAATGATAAATCAGGAGGATCTAGAAGACATGGTGTGGACATTGTCTCAGAGAAGGGATCCAAATCGGTTGTACCTTCAAGATCACCATCACCCTCCACGCCTGTGTCCCGCTGTCAAAGTTTTGCAGAAAGGCCTCTTTCTCAGCCACTCTCACTGCCAGGCTCGCACCTTCCTACTGTCAGTGATGCAAATTCTGGAATTAGTTTAATATCGAAGTTGGAAAGAGTTAGAGGCTCTAAGCCATCTCTATGTTTTCCCCTAGGGAAACTTGGTGATGTATCCAACAGGCACAGGGGATATCCTACCGATGCAGAGGGAGATATAGCCACTGCATCTGTTTCTTGTGACAGCAGCTCTGCTGTTAGTGGTGACTCATCTGATTCACATCTTGTTAGTCCTCTGGCAACTGACTATGAAAGTGGTAACAGAGGTACCATTAACAGTTGCTTCAGGTTGGTGCACAAGGATCAGTCACCTATTACTATCCAGAAAAACTCAAGAGCATCCTCAAAACCAGCTTCTCAATTGTGCAATACTAAGAATTTATCTACTTCACCAAAGCGTAGTCGTTTGCATCTGCAAAATCTGAAAATAGCCCGTTCATGTGGTTTGTGTAGTGCTCCAGCAAGTTCAATGTCAAGTCCTTCTAGAAGTCCAATGAGAGCACTTGGCCCTGAGCCAGTGTTGAACTCTGCATTATGGACAGGAAAGCTTTATCCAGATGTAACTTCTGGGCACTGCTCTAGTCCCGGTTCAGGTATTTCAGGTGGTGGGGATCTGCCAGGGCAGGTGCTTTTGCCACACAACAGGTGCAGCCCTGAGTATTCTCCATTACCTAGTCCAAGAATGATAAGTTCTGTTCCCAGTTCCAGAATACAGAGTGGTGCTGTCACTCCGCTGCATCCACAAGCTGGAGCTGCTGCAGTAGCAATGCCTACAAGACGTCCTGATGATGTGAAACACCAAACTTATCCTTTACCACTTCCTCCACTAACAACCACTAATTCTAGTCCATTTTCGCCAAACTATTCTGCGTCTACAACTCCTTCTGCCTCTCGTAGTCCTGCCAGAGCAGAGAATCCAACAAACCAAGGTTCATGTTGGAAAAAGGGGAAGTTGCTTGGAAGGGGAACATTTGGACATGTGTATCTTGGTTTTAACAGAGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACCCTTTTTTCAGATGATGCTAAATCAAGGGAATGTGCACAACAACTTGGCCAAGAAATTGCACTGCTTAGTCGGTTGCGCCATCCAAATATAGTCCGGTATTATGGTTGTGAGATGGTAGATGACAAACTTTACATTTACTTGGAGTATGTCTCTGGTGGGTCAATCTATAAACTGCTACAAGAGTATGGCCAGTTAGGTGAAATTGCCATTCGTAATTATACTCGGCAAATTCTCTCAGGACTTGCTTATTTGCATGCTAAGAGCACTGTTCATCGGGACATTAAAGGAGCAAACATACTAGTCGATCCTAATGGAGGGATAAAGTTGGCAGATTTTGGGATGGCAAAGCATATAACTGGCCAGTCTTGTCCATTTTCATTCAAAGGAAGTCCTTACTGGATGGCACCTGAGGTTATAAAAAATTCAAATGGTTGTAATCTTGCTGTTGATATATGGAGTTTGGGCTGCACTGTTTTGGAGATGGCTACAACAAAACCGCCTTGGAGCCAGTATGAGGGGGTTGCTGCTATGTTTAAGATTTTATACAGCAGGGATCTTCCTGAAATTCCAGATCATCTACCAGAAGATGGAAAAGATTTTGTGAGGCTTTGTTTGCAGAGAAATCCACAAAACCGTCCTTCAGCTGCCCAACTTCTAGAGCATCCATTTGTTAAAAATGTTACACTAGAAAGGCCCATTCTGACTGCTTATCCTTCAGAAGCTCCGCCGGCTGTTGTAAATGCATTGAGATCTCTGGCAATTGGACCTGCAAAACATAATTTATGCTTGGACGATGTCCATACACCAAGGAACATATCATGCCCTGTTTCTCCCCCTGGGAATCGACTTTTGCCTCGTAGAACACTGGATATGACTGGAAGGGTGCCTCCCTCTCCACTAACCAGTCCTCATCCTTCTTCTAGTCCATCTACTCCAGTCACCAGTGGCGGTGGTGGTGGGGCTATCTCATCTCATAGACAAAAGCAACCAATGTTCTCCTATGAAGCTGTGGGTATGATCCAAAGGTCTCGGAATGTTTTCCATTATCAGGAGCCGAAACATGTACCTCTTCGGGGACCCACACATCCTTCTTCTACTCCATCTACTCCAGTCAGCAGTGGTGGTGTTGTTTTCTCATCTCATAAAAACAAGCAACCAATGTCCTCCAATGAAGCTGTGGGCACGATCCAAAGGTCTCAGGTTGGTTTCCATTATCAGGAGCCAAAACATGATCCTCTTCGGCGACCGACACCTGCTCGCCGGGATGTAATTTCGCCTGATAATGATGCTCTTGCAAACCATTATAGGAGGGCTGTCCCTGCAGCCCCAAGAGAATTTCATAATGTGCCTCAAAATGCCGTTGAGGGACTATATGCGGGTAAATACTTCTTCCCTTGA	2715	0.4486	MPSWWGKSSSKEVKKKKVKRESIIDTIQQKFKNASEKKCNDKSGGSRRHGVDIVSEKGSKSVVPSRSPSPSTPVSRCQSFAERPLSQPLSLPGSHLPTVSDANSGISLISKLERVRGSKPSLCFPLGKLGDVSNRHRGYPTDAEGDIATASVSCDSSSAVSGDSSDSHLVSPLATDYESGNRGTINSCFRLVHKDQSPITIQKNSRASSKPASQLCNTKNLSTSPKRSRLHLQNLKIARSCGLCSAPASSMSSPSRSPMRALGPEPVLNSALWTGKLYPDVTSGHCSSPGSGISGGGDLPGQVLLPHNRCSPEYSPLPSPRMISSVPSSRIQSGAVTPLHPQAGAAAVAMPTRRPDDVKHQTYPLPLPPLTTTNSSPFSPNYSASTTPSASRSPARAENPTNQGSCWKKGKLLGRGTFGHVYLGFNRESGEMCAMKEVTLFSDDAKSRECAQQLGQEIALLSRLRHPNIVRYYGCEMVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRNYTRQILSGLAYLHAKSTVHRDIKGANILVDPNGGIKLADFGMAKHITGQSCPFSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKILYSRDLPEIPDHLPEDGKDFVRLCLQRNPQNRPSAAQLLEHPFVKNVTLERPILTAYPSEAPPAVVNALRSLAIGPAKHNLCLDDVHTPRNISCPVSPPGNRLLPRRTLDMTGRVPPSPLTSPHPSSSPSTPVTSGGGGGAISSHRQKQPMFSYEAVGMIQRSRNVFHYQEPKHVPLRGPTHPSSTPSTPVSSGGVVFSSHKNKQPMSSNEAVGTIQRSQVGFHYQEPKHDPLRRPTPARRDVISPDNDALANHYRRAVPAAPREFHNVPQNAVEGLYAGKYFFP*	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	201	223	-	-
	Dod08g1919	904	CDD	STKc_MEKK1_plant	407	663	-	-
	Dod08g1919	904	Gene3D	Transferase(Phosphotransferase) domain 1	405	680	-	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	32	102	-	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	800	814	-	-
	Dod08g1919	904	SMART	serkin_6	407	663	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1919	904	ProSiteProfiles	Protein kinase domain profile.	407	663	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	746	764	-	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	32	55	-	-
	Dod08g1919	904	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	792	-	-
	Dod08g1919	904	ProSitePatterns	Protein kinases ATP-binding region signature.	413	436	IPR017441	GO:0005524
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	353	406	-	-
	Dod08g1919	904	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA	1	792	-	-
	Dod08g1919	904	Pfam	Protein kinase domain	408	663	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	712	764	-	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	60	102	-	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	792	814	-	-
	Dod08g1919	904	SUPERFAMILY	Protein kinase-like (PK-like)	406	753	IPR011009	-
	Dod08g1919	904	MobiDBLite	consensus disorder prediction	366	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g1919	Dod-Chr8	45835133	45840103	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g1919	4	831	MAP Kinase Kinase Kinase	AT1G63700	55.287	0.0	783

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Dod08g1919		Pkinase	2.4e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g1919	K20717		-	gmx:100814422	988.793