Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1898 ATGATGAAAGGTTTGATGCTAGATGAAAATATGTCCAATTTGACGTCTACATCAAGCGAAGTAAGTGCTTCTTCAGGAACTAGGAATGACGCAGGTTCTCTTTACCCTCAATACTCCTCTACTTCAACAAATCAAGAACCACAACCCAAAAAGAAGAGAAGTCTTCCAGGTCACCCAGACCCTGATGCTGAAGTGATAGCCTTGTCACCCAAGAGCCTTTTGGCAACAAACCGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGGGATCAGAATTTGCAGCTTCATAGAAGAGGGCACAATTTGCCATGGAAGCTAAAGCAAAGAAATAGCAAAGAAATTATAAGAAGGAAGGTGTATGTGTGCCCGGAGCCAACATGTGTTCACCATGACCCATCAAGGGCACTTGGAGACCTCACTGGAATCAAGAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGCGTTACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAGAGAGTATAAATGTGACTGTGGAACCATCTTCTCTAGGAGAGACAGTTTTATCACTCACAGAGCTTTCTGTGATGCTTTAGCACAAGAGAGTACTAGAGCAAACATCACAGCAATGAACCCTCTACTTCATGGCCATGGACTTCAAGCATCACCACCACCATCAGTGAAGAGAGAACAAGACCAGTACTACTTCAACAACCTAAGACCAGAAATTAATAATCCACCTTGGTTGGCCCCACCAACAACATTAGGAGAACCTATCACAGCTTTAGATTTCTCCTCATCATCACAACCACAACCACCATTGCTCCCAACACAATTAGACCACTCTATAGCCCTCCATGACAACCCTAATAATAACAGCCTAATTACCAACTTGCTTAATCCTTCTAATTCTCTTCAATCCTCTACGGCCTCTCCTCACATGTCAGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGCAACAATGAGCAAAACTGCACCACCTAATTCTCTAGCCATAGTTAGACCCCACGTGCTGCAGCATCAGGGTCACGTGCCTGATGAGTATTGTACAAAAGGGTATAGCTCCTCTTCCTCTGCTATGGCTTCACTATCTTCAAATATGGTTATGCACTCACGTGATGAAATAGGAAGTGGTGGTGGTGGGTTTGGTCATGGCTTGGCATCTTATGGGAATAAAGCTGCAATAACTCCTGATTACCTGGAAGAATGTGCTGCCAACACAGAACTTGATCGTCAACAACATCATCTAGAATCTTCTCTTTTCCATGATGTGATGATGGGTGAAAATAATAACAATAATGATAGGTTTGAAGAACTTGTTTCAAAAGCAACACAATCACAGTTTGGTAGAACCAACAAGGATGGTACTACTACTACCACCACTGGAGGAGGTGCCAATGATGAAATGACAAGAGATTTTTTGGGTCTCAGAGCATTTTCTCAAAGAGATTTATTCAATATATCTGGGCTTGATCATTTGGGTTCTTCGTCATATGGCAAGCAAAATCATAACCACGCGCGTTGGCAAGGGTAA 1587 0.4272 MMKGLMLDENMSNLTSTSSEVSASSGTRNDAGSLYPQYSSTSTNQEPQPKKKRSLPGHPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEIIRRKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAQESTRANITAMNPLLHGHGLQASPPPSVKREQDQYYFNNLRPEINNPPWLAPPTTLGEPITALDFSSSSQPQPPLLPTQLDHSIALHDNPNNNSLITNLLNPSNSLQSSTASPHMSATALLQKASQIGATMSKTAPPNSLAIVRPHVLQHQGHVPDEYCTKGYSSSSSAMASLSSNMVMHSRDEIGSGGGGFGHGLASYGNKAAITPDYLEECAANTELDRQQHHLESSLFHDVMMGENNNNNDRFEELVSKATQSQFGRTNKDGTTTTTTGGGANDEMTRDFLGLRAFSQRDLFNISGLDHLGSSSYGKQNHNHARWQG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1898 528 Pfam Zinc-finger double-stranded RNA-binding 79 101 IPR022755 -
Dod08g1898 528 Gene3D Classic Zinc Finger 134 214 - -
Dod08g1898 528 MobiDBLite consensus disorder prediction 9 50 - -
Dod08g1898 528 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 13 507 - -
Dod08g1898 528 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 13 507 - -
Dod08g1898 528 Gene3D Classic Zinc Finger 60 125 - -
Dod08g1898 528 MobiDBLite consensus disorder prediction 463 486 - -
Dod08g1898 528 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Dod08g1898 528 MobiDBLite consensus disorder prediction 1 64 - -
Dod08g1898 528 SMART c2h2final6 79 101 IPR013087 -
Dod08g1898 528 SMART c2h2final6 121 151 IPR013087 -
Dod08g1898 528 SMART c2h2final6 156 176 IPR013087 -
Dod08g1898 528 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Dod08g1898 528 SUPERFAMILY beta-beta-alpha zinc fingers 78 176 IPR036236 -
Dod08g1898 528 MobiDBLite consensus disorder prediction 463 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1898 Dod-Chr8 45076874 45081560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1898 7 342 IDZ Gene Family AT1G55110 51.604 1.16e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g1898 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1898 K25870 - vvi:100257789 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1898 08 45076874 45081560 Dod08g1898 08 45076874 45081560 ECH