Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1892 ATGGAAGGAGTAGTCAGAGTGAAGAAAGAACAACAGGACGAAGAAGAAACAGTGACATGTGCAGCAACGACAACAACAACAACATCTTCTACTTGGTCTTTCACCCCACAAGCACAACCAATGGAAGGGTTGCACGAGGTGGGTCCACCTCCGTTCCTAACGAAGACCTATGAGATGGTGGAAGACCCTTCCACGGACTCCATTGTTTCGTGGAGCAGTGCTCGCAATAGCTTTGTTGTTTGGGACCCTCATAAGTTCTCTACCGATATCTTGTCTCGGTATTTCAAGCATGGCAACTTCTCAAGCTTCGTTCGCCAGCTCAACACATATGGATTTAGAAAAATCGATCCTGATCAATGGGAATTTGCGAATGAAGGGTTTCTGGCAGGACAGAAGCACTTATTAAAGACCATCAAGAGAAGAAGAAATGTGTTGCAAGGAATGCAACAAAGAGGAGGTGGAGGAGGAGCTTGTGTTGAGGTTGGGGAGTATGGACGTGAAGGTGAGGTTGAAAGATTGTGGAGAGACAGGAATGTGTTGATGACAGAACTTGTGAGGCTGAGGCAGCAACAGCAGAACTCAAGGGACCAAGTGTTTGAGATGAAGGCAAGATTGCAAGCCACAGAGAAGAAACAGCAACAGATGATGACTTTCCTTGCCAAAGCACTGAACAATCCCTCTTTCATGCAGCAGCTAGCACAAAAGAATTCAAACAACACACAGTTACTAGGTGTTGAAATCAAGCGAAAGAGGAGGCTAACCACCAGCCCGAGCGTGGAGAGCTTACAAAAAGATGATCATGTGACAATGGCAGTTCCTATTGAATCAGTTGCAGACTATCCAAGCCGTGATGAACAAGACATGTTGACTACTGAGTCGGAGATGGATACTTTTTTCTCAGCACCTTATGATCATGAACTTGGCAGTGAATCAGTTCCAACAGCTAGTGGAGATACAATCTTGGAGGACTTCCTCAATGAAGACTTGGTAACTGGAAATCCAAAGGATGAAGTTATAATTGGTGATTGTTCAAGAATTGATGTGCCAGTGGAGGATTTGGTGGCAAAGCCTGATGATTGGAGTGAGGAATTGCAGGACCTTGATCACATGGGTTATCTTGGGTCCAAACCTTAG 1134 0.4515 MEGVVRVKKEQQDEEETVTCAATTTTTTSSTWSFTPQAQPMEGLHEVGPPPFLTKTYEMVEDPSTDSIVSWSSARNSFVVWDPHKFSTDILSRYFKHGNFSSFVRQLNTYGFRKIDPDQWEFANEGFLAGQKHLLKTIKRRRNVLQGMQQRGGGGGACVEVGEYGREGEVERLWRDRNVLMTELVRLRQQQQNSRDQVFEMKARLQATEKKQQQMMTFLAKALNNPSFMQQLAQKNSNNTQLLGVEIKRKRRLTTSPSVESLQKDDHVTMAVPIESVADYPSRDEQDMLTTESEMDTFFSAPYDHELGSESVPTASGDTILEDFLNEDLVTGNPKDEVIIGDCSRIDVPVEDLVAKPDDWSEELQDLDHMGYLGSKP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1892 377 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Dod08g1892 377 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 27 331 - -
Dod08g1892 377 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 Gene3D - 45 142 IPR036388 -
Dod08g1892 377 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1892 377 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 331 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1892 Dod-Chr8 45007165 45010681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1892 39 377 HSF AT2G26150 55.263 4.30e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod08g1892 HSF_DNA-bind 7.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1892 K09419 - gmx:100778558 472.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1892 08 45007165 45010681 Dod08g1892 08 45007165 45010681 ECH
Dod08g1892 08 45007165 45010681 Dod09g1968 09 41160015 41160901 PCT