Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1872 ATGGAAGGAGTAGTTAGAGTGAAGAAAGAACAACAGGACGAAGAAGAAACAGTGACATGTGCAGCAACGACAACAACAACAACATCTTCTACTTGGTCTTTCACCCCACAAGCACAACCAATGGAAGGGTTGCACGAGGTGGGTCCACCTCCGTTCCTAACGAAGACCTATGAGATGGTGGAAGACCCTTCCACGGACTCCATTGTTTCGTGGAGCAGTGCTCGCAATAGCTTTGTTGTTTGGGACCCTCATAAGTTCTCTACCGATATCTTGTCTCGGTATTTCAAGCATGGCAACTTCTCAAGCTTCGTTCGCCAGCTCAACACATATGGATTTAGAAAAATCGATCCTGATCAATGGGAATTTGCGAATGAAGGGTTTCTGGCAGGACAGAAGCACTTATTAAAGACCATCAAGAGAAGAAGAAATGTGTTGCAAGGAATGCAACAAAGAGGAGGTGGAGGAGGAGCTTGTGTTGAGGTTGGGGAGTATGGACGTGAAGGTGAGGTTGAAAGATTGTGGAGAGACAGGAATGTGTTGATGACAGAACTTGTGAGGCTGAGGCAGCAACAGCAGAACTCAAGGGACCAAGTGTTTGCGATGAAGGCAAGATTGCAAGCCACAGAGAAGAAACAGCAACAGATGATGACTTTCCTTGCCAAAGCACTGAACAATCCCTCTTTCATGCAGCAGCTAGCACAAAAGAATTCAAACAACACACAGTTACTAGGTGTTGAAATCAAGCGAAAGAGGAGGCTAACCACCAGCCCGAGCGTGGAGAGCTTACAAAAAGATGATCATGTGATAATGGCAGTTCCTATTGAATCAGTTGCAGACTATCCAAGCCGTGATGAACAAGACATGTTGACTACTGAGTCGGAGATGGATACTTTTTTCTCAGCACCTTATGATCATGAACTTGGCAGTGAATCAGTTCCAACAGCTAGTGGAGATACAATCTTGGAGGACTTCCTCAATGAAGACTTGGTAACTGGAAATCCAAAGGATGAAGTTATAATTGGTGATTGTTCAAGAATTGATGTGCCAGTGGAGGATTTGGTGGCAAAGCCTGATGATTGGAGTGAGGAATTGCAGGACCTTGATCACATGGGTTATCTTGGGTCCAAACCTTAG 1134 0.4506 MEGVVRVKKEQQDEEETVTCAATTTTTTSSTWSFTPQAQPMEGLHEVGPPPFLTKTYEMVEDPSTDSIVSWSSARNSFVVWDPHKFSTDILSRYFKHGNFSSFVRQLNTYGFRKIDPDQWEFANEGFLAGQKHLLKTIKRRRNVLQGMQQRGGGGGACVEVGEYGREGEVERLWRDRNVLMTELVRLRQQQQNSRDQVFAMKARLQATEKKQQQMMTFLAKALNNPSFMQQLAQKNSNNTQLLGVEIKRKRRLTTSPSVESLQKDDHVIMAVPIESVADYPSRDEQDMLTTESEMDTFFSAPYDHELGSESVPTASGDTILEDFLNEDLVTGNPKDEVIIGDCSRIDVPVEDLVAKPDDWSEELQDLDHMGYLGSKP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1872 377 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Dod08g1872 377 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 330 IPR027725 -
Dod08g1872 377 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1872 377 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1872 377 Gene3D - 45 142 IPR036388 -
Dod08g1872 377 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 27 330 - -
Dod08g1872 377 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1872 377 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1872 377 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dod08g1872 377 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1872 Dod-Chr8 44311416 44314930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1872 39 377 HSF AT2G26150 55.556 5.59e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dod08g1872 HSF_DNA-bind 7.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1872 K09419 - gmx:100778558 473.781