Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1842 ATGGGTTGGGGTCACATCGGAAGGAATGGCGGCGGTGACGAGGCAGGTCCCAGCACCACCACTACCGCCGCTGGACCACGGCGGTTCTCACTGGCGGCTCAGCCGGAGATGATGCGGGCCGCCGAGAAGGACGAACAGTACGCCTCTTTCGTCTACGAAGCCTGCCGCGACGCCTTCCGCCACCTCTTCGGTACGAGGGTTGCTGTTGCTTTCCAAAATGAGACAAAGCTTTTGGGGCAGATGCTTTACTATGTGCTCACAACAGGGTCGGGGCAACAGACGCTAGGAGAGGAATACTGTGACATCACTCAGGTTGCAGGACCTTATGGGCTTCCTCCTACCCCTGCGAGGCGCACTCTTTTCATTGTATATCAGACTGCTATTCCTTATATTGCAGAACGTATTAGTTCTCGAATTGCTTCGCGTGGCATTGTCCTTGCTGATTCAGAGTTTTCTGAGAGTTATGGTGAAAATGCCCCCAGGAGCAGTTCACAGGGTTCTGCCGTGAATGAACTTGCTTCTTCTTCCACATCAGGACAATATAGTTCAACTCTTGCTAGGTTGAAGGAACAACTGAGTGGATTTTGGTTGCATGTGGTTCACAGGTGGCCTACGATGCTTCCTTTTGTGCGCGAGTTGATGCAGCTGGTTCTCCGTGCGAACCTAATGCTGTTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCGGGCATTCGTTATGTGTTCATTGGGAAACCATCAAATCAAAGACCGAGATACCAAATACTAGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTACTGGTTCAGTTCATCAGGCATCCTATGCGACCCAACAGAGATCAGCAGGACATGGTTTGCCTGTTTTGAATGAAGAAGGTTCTTTGGCTTCTCCAGATACAGACAAAGGAAGTTGGGCCTTTGATTCTTCATCTTCTGAGTACAATGTAACTAGCGGTGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAGCACCCAACAGCTACTTCATGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAATGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCATAACACACTCAAGTCTAGTCTGTGTGTATCATTCAGACTTCTAG 1185 0.4878 MGWGHIGRNGGGDEAGPSTTTTAAGPRRFSLAAQPEMMRAAEKDEQYASFVYEACRDAFRHLFGTRVAVAFQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRTLFIVYQTAIPYIAERISSRIASRGIVLADSEFSESYGENAPRSSSQGSAVNELASSSTSGQYSSTLARLKEQLSGFWLHVVHRWPTMLPFVRELMQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKPSNQRPRYQILGVFLLIQLCVIAAEGLRRRNFTSITGSVHQASYATQQRSAGHGLPVLNEEGSLASPDTDKGSWAFDSSSSEYNVTSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1842 394 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 25 391 - -
Dod08g1842 394 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Dod08g1842 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 391 IPR013083 -
Dod08g1842 394 ProSiteProfiles Zinc finger RING-type profile. 340 378 IPR001841 -
Dod08g1842 394 SUPERFAMILY RING/U-box 339 383 - -
Dod08g1842 394 SMART ring_2 340 377 IPR001841 -
Dod08g1842 394 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 - -
Dod08g1842 394 MobiDBLite consensus disorder prediction 1 27 - -
Dod08g1842 394 CDD RING-HC_PEX10 339 378 - -
Dod08g1842 394 PANTHER PEROXISOME BIOGENESIS FACTOR 10 25 391 - -
Dod08g1842 394 Pfam Pex2 / Pex12 amino terminal region 44 277 IPR006845 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1842 325 390 C3H Transcription Factor Family AT4G28270 29.268 6.10e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1842 K13346 - gmx:100816042 677.552