Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1835 ATGAGCAGGAGACTAGTAAGTGTAGATGTCAGAGGATTTCGCAAAAGAGGGATCAGATATGACTGGAAGATGAAACAAGAAGCTCACCTCTGCTTGACAAAAATTGTTCAGTCATCAGCTCCATACTGTTTATTCCATTGGAGAGTGAGCACTGCATCACTACTACTACAGCAAGGTGCAAGGCTTGGTTTAGTGCAGCAGTTTCCTCAGGTGTTCCTCTTGTCTTTGTCAATATCCAGACAGAACAAATTATGTCCTCCTCGGCAACAAATCAACAACATTACCCAAATAATGCATGGTATAAGGTTGTGGTTCCTACCAGGACTAGTAGCAACAGAATTGATCCCTCAAAGCTGCGAAAAACGCTTGGGAATGGAAATTAAACGGACAGAAGAGGGTTTTATGTGCATCTACTCAGTGATGACTGGTTCAGCAGCAGACCATGCTGGGGTTAGAGAGCTCTATGAAGAGGCACTTGCAAGAGGGTTCCTTCTTGTGGTGTCAAGGTTAGAAGGGAAGAGCCTGTTGCCAACAAAACACAACACAGAACAGAGTTCCCTCTTATTATTATTATCTTGTGCGGTGAACATGAAGGAGGAAAGTGACAGCTACGATCCTCGTACCGTCGAAGACGTCTTCCGTGATTTCAAGGCTCGCCGAACTGCCTTGATTAAGGCCCTCACCACCGATTTTCAAGAGTTCTTTCAACAGTGTGATCCCGATAAGGACAATCTTTGCCTGTATGGATTCCCTACTGAGGAGTGGGAAGTCAATCTGCCTGTTGAGGAGGTGCCCCCAGAGATTCCAGAGCCAGCATTGGGTATTAACTTTGCCAGAGATGGGCTGGATGCAAATGAGTGGCTGTATATGGTTGCTGCCCACAGTGATTCTTGGATACTTGCTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGATAAGGCTGATAGGAAGAAACTATTTACTATGATAAATGATCTTCCAACAATACTTGATGTTGTTAGAGGGGTGGCCAAGAAACAAGGAAAGGAAAAGCCATCGGTTTCTAATAATCATAGCAGTAACAAATCCAAATCAAACTCTAAGGCGAAGCATTCAAAAGCAAAAAAATCAAAGGAAGATGGCGATGATGAGGAACAGGGAGATACATCGTGTGGGGCATGTGGCGAGCGCAACAACCCTAGTGGGTTCTGGATTTGCTGCGATGCCTGTGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATCACCCCTGCAAGGGCTGAGCACATGAAGCAGTACAAATGTCCACCTTGCAGCAACAAGAGAGCTAGACATTGA 1317 0.4495 MSRRLVSVDVRGFRKRGIRYDWKMKQEAHLCLTKIVQSSAPYCLFHWRVSTASLLLQQGARLGLVQQFPQVFLLSLSISRQNKLCPPRQQINNITQIMHGIRLWFLPGLVATELIPQSCEKRLGMEIKRTEEGFMCIYSVMTGSAADHAGVRELYEEALARGFLLVVSRLEGKSLLPTKHNTEQSSLLLLLSCAVNMKEESDSYDPRTVEDVFRDFKARRTALIKALTTDFQEFFQQCDPDKDNLCLYGFPTEEWEVNLPVEEVPPEIPEPALGINFARDGLDANEWLYMVAAHSDSWILAVAFYFGARVGFDKADRKKLFTMINDLPTILDVVRGVAKKQGKEKPSVSNNHSSNKSKSNSKAKHSKAKKSKEDGDDEEQGDTSCGACGERNNPSGFWICCDACEKWFHGKCVKITPARAEHMKQYKCPPCSNKRARH* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1835 438 MobiDBLite consensus disorder prediction 341 385 - -
Dod08g1835 438 ProSitePatterns Zinc finger PHD-type signature. 385 431 IPR019786 -
Dod08g1835 438 Pfam PHD-finger 385 434 IPR019787 -
Dod08g1835 438 Pfam Alfin 208 335 IPR021998 GO:0006355|GO:0042393
Dod08g1835 438 CDD PHD_AL_plant 385 434 IPR044104 -
Dod08g1835 438 PANTHER CPG BINDING PROTEIN 200 437 IPR045104 GO:0006355|GO:0042393
Dod08g1835 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 433 IPR013083 -
Dod08g1835 438 SUPERFAMILY FYVE/PHD zinc finger 374 435 IPR011011 -
Dod08g1835 438 SMART PHD_3 384 432 IPR001965 -
Dod08g1835 438 ProSiteProfiles Zinc finger PHD-type profile. 382 434 IPR019787 -
Dod08g1835 438 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3 200 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1835 Dod-Chr8 43012490 43021350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1835 204 437 Alfin-like Transcription Factor Family AT3G42790 65.306 1.75e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dod08g1835 Alfin 4.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1835 - - gmx:100797908 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1835 08 43012490 43021350 Dod08g1835 08 43012490 43021350 ECH