Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1828 ATGCCAAATGCATATTCACAGAATGAAAAGAGCAATACCACACCTTGGAGTAAAGAACAAAACAAGATATTCGAAGAAGCCATTTTCATATTCAACGAGGATACCCCAGATAGATGGCATAAGATTGCAGCATGGATCCCTGGGAAGACTTGGTTTGATGTGCTCAGGCATTATAAGAAACTGATAGCAGACATTAATAAAATACATTCCGGAAATTGTGATTTTCCTGAGCACACTTCTTCTTCTTGTACCGCATCATCTGATAAGGAGGTAGTTGACAGTGCCGTCGAGGATTCTTCTGATCAGAAGGGGAAGAAGGTGGTCAAACGTTGGACAGACGATGAACACAGGCGTTTTCTGATGGGACTTCAAAGGTATGGGGAAGGAGCATGGAAACTAATAGCTGATAACTGTGTGGTGACAAGAGATCACAAGCAAGTGGCAAGCCATGCACAGAAGTATAACATAAGGCAAAAAATAAATTCAGAAGAAAGAAAGAGAAAAAGAACCAGCATACATGATATGACTATAGAAACTATCAGATCAAATAAGAGGAACGAGTCTCACATTCCTACATTGCATCAGAATCTGACAGCTGGCATGACACAGGTACAGGATACGACGATTAATCATCATCACAATAACGTGGCACCAATGAGTTTCAACGCAAATCCTAATACTTTGTTTGAGCCAGCTGGGTTTTCAGCCGGTCCGAATTTGCCTTTGCTTTGA 732 0.4112 MPNAYSQNEKSNTTPWSKEQNKIFEEAIFIFNEDTPDRWHKIAAWIPGKTWFDVLRHYKKLIADINKIHSGNCDFPEHTSSSCTASSDKEVVDSAVEDSSDQKGKKVVKRWTDDEHRRFLMGLQRYGEGAWKLIADNCVVTRDHKQVASHAQKYNIRQKINSEERKRKRTSIHDMTIETIRSNKRNESHIPTLHQNLTAGMTQVQDTTINHHHNNVAPMSFNANPNTLFEPAGFSAGPNLPLL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1828 243 CDD SANT 15 62 IPR001005 -
Dod08g1828 243 CDD SANT 110 154 IPR001005 -
Dod08g1828 243 Gene3D - 109 160 - -
Dod08g1828 243 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 229 - -
Dod08g1828 243 Pfam Myb-like DNA-binding domain 110 154 IPR001005 -
Dod08g1828 243 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 229 IPR043363 -
Dod08g1828 243 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Dod08g1828 243 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
Dod08g1828 243 SMART sant 107 157 IPR001005 -
Dod08g1828 243 SMART sant 12 64 IPR001005 -
Dod08g1828 243 Gene3D - 7 75 - -
Dod08g1828 243 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 157 IPR006447 GO:0003677
Dod08g1828 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 159 IPR017930 -
Dod08g1828 243 SUPERFAMILY Homeodomain-like 106 159 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1828 Dod-Chr8 42936046 42937620 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod08g1828 Myb_DNA-binding 8.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1828 - - gmx:100783469 182.57