LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g1824	ATGGAGGAGGAGGCTGCTATGGAAGCAGAATCCGAAGCAGCAGAAGAAGAAGAAGAAGAAGAACAACAGCAACAAATAGAAGAAGAAGATGAGAGTGCGGGTTCGAGCTTGACGATGGTGAAGGTCGCCGCAGCAAAGAAGTTCATCGAGAACCACTACAGGACTCACATGAAGAACATCCAAGACCGCAAGGAAAGGCGTTGGATTTTAGAAAGAAAATTAGCTTCTTCAGACGTGCCAAATGAGGAACGGATCAATCTCATCAAAGAACTAGAGAGAAAGGAGACAGAATATATGCGATTGAAAAGGCATAAAATATGTGTTGATGATTTTGAGCTTTTGGCCATCATTGGAAGGGGTGCCTATGGAGAGGTTAGACTTTGTTGGGAGAAGAAATCTGGAAACATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAGGAAAGGCCAGGTGGAACATGTTCGAGCTGAGAGGAACTTGCTTGCTGAAGTTGCTAGTCATTGCATTGTGAAACTTTACTACTCATTTCAAGATGCTGATTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATGTGATGACTCTGCTGATTAGGGAAGACACCCTGAGTGAAAATGTTGCTAGATTTTACATTGCGCAGAGTGTTCTGGCCATAGAGTCTATTCATAAACACGGTTACATTCACAGAGATATCAAACCTGATAACCTACTTCTGGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTCGACTGTACCACCCTGTATATGCTGAATGAAAATCAGATCATGGATGATGGAAATTTCGCAGAGCCTATGGATATTGATGGGCATTTTCCTGGCACGGATAAGCCAAGCAGTTGGAGAAGTCCACGTGAGCAGCTTGAGCATTGGCAGATGAACAGGAGAAAGTTGGCCTTTTCTACAGTGGGAACACCAGATTACATTGCTCCTGAAGTACTTCTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCACTTGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTACTCAAATGATCCAATGATTACCTGTAGAAAGATTGTTCACTGGTGA	1122	0.4251	MEEEAAMEAESEAAEEEEEEEQQQQIEEEDESAGSSLTMVKVAAAKKFIENHYRTHMKNIQDRKERRWILERKLASSDVPNEERINLIKELERKETEYMRLKRHKICVDDFELLAIIGRGAYGEVRLCWEKKSGNIYAMKKLKKSEMLRKGQVEHVRAERNLLAEVASHCIVKLYYSFQDADYLYLIMEYLPGGDVMTLLIREDTLSENVARFYIAQSVLAIESIHKHGYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLYMLNENQIMDDGNFAEPMDIDGHFPGTDKPSSWRSPREQLEHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSNDPMITCRKIVHW*	374

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g1824	373	SMART	serkin_6	111	372	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1824	373	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	32	373	-	-
	Dod08g1824	373	Pfam	Protein kinase domain	310	364	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1824	373	Pfam	Protein kinase domain	112	260	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1824	373	Gene3D	Transferase(Phosphotransferase) domain 1	313	372	-	-
	Dod08g1824	373	Coils	Coil	84	104	-	-
	Dod08g1824	373	ProSitePatterns	Protein kinases ATP-binding region signature.	117	140	IPR017441	GO:0005524
	Dod08g1824	373	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	230	242	IPR008271	GO:0004672\|GO:0006468
	Dod08g1824	373	MobiDBLite	consensus disorder prediction	1	28	-	-
	Dod08g1824	373	PANTHER	SERINE/THREONINE-PROTEIN KINASE	32	373	-	-
	Dod08g1824	373	MobiDBLite	consensus disorder prediction	1	36	-	-
	Dod08g1824	373	SUPERFAMILY	Protein kinase-like (PK-like)	93	372	IPR011009	-
	Dod08g1824	373	Gene3D	Transferase(Phosphotransferase) domain 1	195	261	-	-
	Dod08g1824	373	ProSiteProfiles	Protein kinase domain profile.	111	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dod08g1824	373	Gene3D	Phosphorylase Kinase; domain 1	89	194	-	-
	Dod08g1824	373	Coils	Coil	2	32	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g1824	Dod-Chr8	42855165	42865094	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g1824	19	373	AGC Kinase Gene Family	AT4G33080	79.437	0.0	595

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Dod08g1824		Pkinase	5.2e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g1824	K08790		-	cit:102627835	628.632