Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1820 ATGACTCCTAAAAAGACCACATGGAAGTCTAAGTCTATAGCCTTGATCCTAAGTTGTTGCAAGACTGATGAGTGCCCTTTGGAATTGGAGGAATCAGAGAAAAAAGTCTTAAAACAAGGCTCTTTCCAGAGGCTATGCCTATCAGATGTAAGCAATTCAAGCTCCTCTCAGGCCATTGAAGACCTTTCAGTTTCACTTGCTGGCTCAAAACTTTATACATTCACACTTGAGGAGTTGAGAGAAGCAACACACAACTTCTCATGGAATAATATGCTTGGTGAAGGTGGGTTTGGCCCTGTGTACAAGGGTTTTGTTGATAAGCTTGGGAATGGTTTGAAGGCTCAGACTGTGGCAGTGAAAAGATTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTGGGTCAGCTAAGGCATTCACATCTTGTTAAGTTAATTGGATACTGTTATGAAGATGAGAACAGGCTTTTGGTGTATGAATACATGCCAAGAGGCAGCTTGGAGAATCAACTCTTCAGAAGGTACTCTGCTGCCATGCCATGGTCAACCAGGATGAAAATTGCATTAGGTGCAGCTAAGGGCCTTGCCTTCCTTCACGGAACAGATAAACCTGTAATATACAGGGATTTCAAAGCTTCAAACATCTTACTAGACTCAGATTTCACAGCTAAACTTTCAGACTTTGGGCTAGCTAAGGATGGACCTGAAGGAGAAGACACACATGTAACAACACGCATCATGGGAACACAGGGCTATGCTGCTCCTGAGTACATCATGACAGGTCACCTTACAACCAAGAGTGATGTGTATAGCTATGGAGTTGTTCTGTTGGAATTGCTAACTGGAAAGCGGGTAGTTGATAAGTCCTTGACAACTAGAGGGAAGAGCTTGGTGGGATGGGCAAGGCCTTCGTTGAGAGACCAAAAGAAGTTGAACCAAATCATAGATAGAAGATTGGAAGGTCAATTCCCCATGAAAGGAGCTATGAAGGTTGCTAATTTGGCTTATAGGTGCCTGAGTCACCACCCAAATCCAAGGCCTACTATGAGTGATGTGGTGAAGATATTGGAGCCACTTCAGGACTTTGATGATGTGTTCATAGAACCATTTGTGTATGTTGCCACAAGTAGTTAA 1152 0.4349 MTPKKTTWKSKSIALILSCCKTDECPLELEESEKKVLKQGSFQRLCLSDVSNSSSSQAIEDLSVSLAGSKLYTFTLEELREATHNFSWNNMLGEGGFGPVYKGFVDKLGNGLKAQTVAVKRLDLDGLQGHREWLAEIIFLGQLRHSHLVKLIGYCYEDENRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHGTDKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTHVTTRIMGTQGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGKRVVDKSLTTRGKSLVGWARPSLRDQKKLNQIIDRRLEGQFPMKGAMKVANLAYRCLSHHPNPRPTMSDVVKILEPLQDFDDVFIEPFVYVATSS* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1820 383 ProSiteProfiles Protein kinase domain profile. 86 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod08g1820 383 Gene3D Transferase(Phosphotransferase) domain 1 168 373 - -
Dod08g1820 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Dod08g1820 383 Pfam Protein tyrosine and serine/threonine kinase 88 362 IPR001245 GO:0004672|GO:0006468
Dod08g1820 383 Gene3D Phosphorylase Kinase; domain 1 47 167 - -
Dod08g1820 383 CDD STKc_IRAK 92 365 - -
Dod08g1820 383 PANTHER OS01G0588500 PROTEIN-RELATED 25 382 - -
Dod08g1820 383 PANTHER KINASE 1B 25 382 - -
Dod08g1820 383 SUPERFAMILY Protein kinase-like (PK-like) 59 362 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1820 Dod-Chr8 42789336 42791981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1820 73 362 Glycoside Hydrolase AT3G07070 53.242 7.22e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dod08g1820 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1820 - - gmx:100802636 639.032