Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1735 ATGATGGTGAAGCCTTCCCATATTCCTAGTGGCTCTACAAGTAAAGCAACGCTGAAGAAAATGAAGGAAGTGATTTCGAAAAAGGTGAGTGAAATCACTATTGTTTGTGCAATTCAAGTTTGTTCAATACTAACTAGCCCTTTTGACTCCCAGACAAAGGTTTCGCCAGATGTAGAGGAAGCCAAACAGGTGACTGATGAGTGTTCTCAAAGCTCATTCATGGTAGATGAAAGCGAGGATGTGAATCAGAAGAACGTCTTGATGCATAGGCTTGCCAAAGCCAAATACCAATTGGAGAAAAGGCGCAAGGAGAACCTTGAGAAAGAGATGACTCTGGCTTTGTGTGTGTATATGCAAAGCAAAGAGCTACTAGAGAACCTGACAATCACAGATGCTAAAGATATATATCGACATGCCGGTTGA 423 0.4184 MMVKPSHIPSGSTSKATLKKMKEVISKKVSEITIVCAIQVCSILTSPFDSQTKVSPDVEEAKQVTDECSQSSFMVDESEDVNQKNVLMHRLAKAKYQLEKRRKENLEKEMTLALCVYMQSKELLENLTITDAKDIYRHAG* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1735 140 SUPERFAMILY SRF-like 7 61 IPR036879 GO:0003677|GO:0046983
Dod08g1735 140 Coils Coil 89 109 - -
Dod08g1735 140 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 132 - -
Dod08g1735 140 PANTHER MADS BOX PROTEIN 3 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1735 Dod-Chr8 41262054 41262476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1735 3 135 Type I MADS-box Gene Family AT5G48670 33.083 4.32e-13 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Dod08g1735 SRF-TF 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1735 - K08023 gmx:100792290 111.309