Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1730 ATGACAGAGGTTGATGATCATAGAGGGGTTGATCACAGAGACCCTTTTCCTGTAGGAATGCGTGTTCTTGCTGTTGATGATGACCCAACATGCCTCATGATTTTGGAGACTTTGCTCCAGAAGTGTCAATATCATGTAACTACGACTAAGAATGCAATAACAGCACTGAATTTGTTGAGGGAAAACAAAAACGAGTTTGACCTTGTAATTAGTGATGTTCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGTTGTCTGTAAATGATGACCCAAAAATGGTGATGAAGGGAATTACACATGGTGCCTGTGATTATCTGCTGAAACCTGTTAGAATTGAGGCACTGAAGAACATTTGGCAGCATGTGATTAGGAAGAAGAAGGCTGACTCAAAGGAGCAGAACAAAACCAGCAACCAAGACAAACCTGACTCTGGTAGCTGCAATGAAATAGGATCAGCATCAACAGAAAATTCAGATCAAAATGGACGGCATAACAAGAAAAGGAAGGATCAAGATGAAGATAGTGATGAGGATCATGAGAATGGTCATGACAATGAGGACCCTTCAACACAAAAGAAGCCTCGAGTTGTTTGGTCTGTGGAACTGCATCGCAAGTTTGTAAATGCCGTTCATCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCACCTGCAGGCATTTTCTTCTCTAATCCTTTACACTCAGTTGGATATAGTCTAA 810 0.4111 MTEVDDHRGVDHRDPFPVGMRVLAVDDDPTCLMILETLLQKCQYHVTTTKNAITALNLLRENKNEFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVNDDPKMVMKGITHGACDYLLKPVRIEALKNIWQHVIRKKKADSKEQNKTSNQDKPDSGSCNEIGSASTENSDQNGRHNKKRKDQDEDSDEDHENGHDNEDPSTQKKPRVVWSVELHRKFVNAVHQLGIDKAVPKKILDLMNVEKLTRENVASHLQAFSSLILYTQLDIV* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1730 269 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 258 IPR045279 GO:0009736
Dod08g1730 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 257 IPR006447 GO:0003677
Dod08g1730 269 SMART REC_2 20 132 IPR001789 GO:0000160
Dod08g1730 269 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 11 258 - -
Dod08g1730 269 Pfam Response regulator receiver domain 22 130 IPR001789 GO:0000160
Dod08g1730 269 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Dod08g1730 269 Pfam Myb-like DNA-binding domain 208 255 IPR001005 -
Dod08g1730 269 MobiDBLite consensus disorder prediction 138 208 - -
Dod08g1730 269 Gene3D - 19 156 - -
Dod08g1730 269 Gene3D - 202 260 - -
Dod08g1730 269 SUPERFAMILY Homeodomain-like 203 258 IPR009057 -
Dod08g1730 269 PIRSF RR_ARR_type-B 1 258 IPR017053 GO:0003677|GO:0003700|GO:0009736
Dod08g1730 269 CDD REC_typeB_ARR-like 22 136 - -
Dod08g1730 269 MobiDBLite consensus disorder prediction 152 172 - -
Dod08g1730 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Dod08g1730 269 SUPERFAMILY CheY-like 19 143 IPR011006 -
Dod08g1730 269 MobiDBLite consensus disorder prediction 173 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1730 Dod-Chr8 41164394 41166533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1730 14 257 Response Regulator Gene Family AT2G25180 69.796 2.13e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Dod08g1730 Response_reg 1.6e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1730 - K14491 gmx:100803879 417.157