Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1728 ATGGAGAGACTGAGCAAGGAGCCATACTTGTGTGATAACCCCACCAACATCCTCTCTGCTCCAGAGACTCCTCCAAGTCCATGTACGCCATTGCAGAATCCACAGGAAAAGACACAGCAATCTGTTGAGGAAGAAGAGGAAGAAAAGGGAAGGAAGGTGGACACCTTATTGGATCTGAATGTCTGTAATGATGATTCTGCTCTTGGTTTCAGTTCAGAAGGGCCAGAACTCAATCTCATCACTTGTTTGGATATGGATTCAACTAAGGCTAATTCATCAGAGAACCCTCTTGGTTCTGATGCAGAACCAAGAGTCTTCCCTTGCAACTACTGCCAGAGGAAGTTCTACAGTTCACAAGCACTAGGGGGACACCAAAATGCTCACAAGAGGGAGAGGTCAATAGCAAAAAGAGGGCACAGGTTTGGAACACAGATAATGGCCTCAGCAGCAGCCTTTGGCCTTCCTCTTCTCTATAGCCACCGGTATGCAAGCATGGCTTCTCTACCCCTCCATGGTGCTTGCAATAATAGACCACTTGGAATTCAAGCACACTCCTTGATCCAGAAGCCTTCTCATGTTTCCTCTAATGGATTTGGAAGTTCTAGTGGTCATCATCATGGTTGGTCAAGACCCCTTATTGATCAACAACCTGGTGTAGCAAAGCTAGCTATTACAGATTTTCACAGAACAGCATCAGCATTTTCATCAAGAGGCAGTGTTGGTAGGTTTGAAGTGGTAAATACTACGATGAATTCTGCAGCCAATAAAGAAATCAGTGGATATCTGGTTAATAGTGGAGCTCGTTTGAAGACTAATCATCATCAAGAAGAAATTAAGCACCTTGATTTATCTCTCAAGCTCTGA 864 0.4433 MERLSKEPYLCDNPTNILSAPETPPSPCTPLQNPQEKTQQSVEEEEEEKGRKVDTLLDLNVCNDDSALGFSSEGPELNLITCLDMDSTKANSSENPLGSDAEPRVFPCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQIMASAAAFGLPLLYSHRYASMASLPLHGACNNRPLGIQAHSLIQKPSHVSSNGFGSSSGHHHGWSRPLIDQQPGVAKLAITDFHRTASAFSSRGSVGRFEVVNTTMNSAANKEISGYLVNSGARLKTNHHQEEIKHLDLSLKL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1728 287 MobiDBLite consensus disorder prediction 1 52 - -
Dod08g1728 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Dod08g1728 287 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Dod08g1728 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 287 IPR044246 GO:0009788
Dod08g1728 287 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 287 - -
Dod08g1728 287 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Dod08g1728 287 Gene3D Classic Zinc Finger 87 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1728 Dod-Chr8 41088493 41089948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1728 26 287 C2H2 Transcription Factor Family AT5G10970 39.416 1.08e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod08g1728 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1728 - - lja:Lj5g3v0526470.1 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1728 08 41088493 41089948 Dod09g1853 09 40134642 40135734 PCT