Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1716 ATGGCGTACCACAACCACCACCTTTCTCAAGACATCGCACTCCACCATTTCACCGACCAATCCAACACCTTCCGTTCCATATTGCCGGACCAGCAGCTACCTTCGTCTCCGGACCCAACCTCCAAACCAAGCTCCGATCCTCACCACCCTCTCCAAACCGCACCCAATTGGCTCAACAACGCTCTCCTCCGAACCCACTACACCGACACCACCAACAACGACACCAATACCAACACCAACGTTGTTAACGCCAACAACAACGGCAACTCCAGTTTTCTCAACCTCCACACCGCCGCCGACTCAGCTTCCCAGCCGTCCCAATGGCTCGCCCGCCCGATCCTCGATGACGTCGCCGGGGAGTCCGTCATCGGCGGAGGGGCGGCGGAGGCGGCGATGGGGCACGAGTCCGGCGAAATGAAGCCGGGGCTCGGCGGGAAGGGGGAGGCGGAGGTGGTCGGAGACGGCGGAGGAGGGGGGATGGTGAATTGGCAGTTGGGGAGGTGGAAGGCGGAGATTCTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCACACGTGGCGTGCCTGAGGATCGCGACGCCGGTGGACCAGCTGCCGAGGATCGACGCCCAGCTGGCGCAGTCGCAGAATGTGGTCGCTAAGTACTCCGCCTTCGGACATGGCGCTCAGACCATGGTTGGGGATGACAAGGAACTCGACCAGTTCATGTCGCACTATGTTTTGTTGCTCTGCTCTTTCAAAGAACAATTGCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCGCCTGGAGAAGGTACAGGGGCAACGATGTCTGATGACGAAGATGACCAAGTAGATAGTGATACCAACCTGTTTGATGGTAGTTTGGATGGCCATGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAGTGAGAGATCCCTCATGGAGCGTGTAAGACAAGAATTAAAGCATGAATTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTACTTAAAGCTTGGTGGCAATCACATTCCAAATGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCATAGCAATCCTTCATCTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1296 0.5363 MAYHNHHLSQDIALHHFTDQSNTFRSILPDQQLPSSPDPTSKPSSDPHHPLQTAPNWLNNALLRTHYTDTTNNDTNTNTNVVNANNNGNSSFLNLHTAADSASQPSQWLARPILDDVAGESVIGGGAAEAAMGHESGEMKPGLGGKGEAEVVGDGGGGGMVNWQLGRWKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQTMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDTNLFDGSLDGHDSMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSSTVLKSKRKR* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1716 431 ProSiteProfiles ELK domain profile. 334 354 IPR005539 GO:0003677
Dod08g1716 431 SMART KNOX1_2 166 210 IPR005540 GO:0003677|GO:0005634
Dod08g1716 431 MobiDBLite consensus disorder prediction 276 296 - -
Dod08g1716 431 CDD homeodomain 357 418 IPR001356 GO:0003677
Dod08g1716 431 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Dod08g1716 431 SUPERFAMILY Homeodomain-like 356 420 IPR009057 -
Dod08g1716 431 Gene3D - 353 425 - -
Dod08g1716 431 SMART ELK_2 334 355 IPR005539 GO:0003677
Dod08g1716 431 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 431 - -
Dod08g1716 431 Pfam KNOX2 domain 226 276 IPR005541 GO:0003677|GO:0005634
Dod08g1716 431 Pfam ELK domain 334 355 IPR005539 GO:0003677
Dod08g1716 431 SMART KNOX2_2 222 277 IPR005541 GO:0003677|GO:0005634
Dod08g1716 431 SMART HOX_1 356 421 IPR001356 GO:0003677
Dod08g1716 431 Pfam KNOX1 domain 169 209 IPR005540 GO:0003677|GO:0005634
Dod08g1716 431 MobiDBLite consensus disorder prediction 27 54 - -
Dod08g1716 431 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
Dod08g1716 431 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 42 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1716 Dod-Chr8 40769713 40775060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1716 1 431 Homeobox Transcription Factor Family AT5G25220 65.784 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Dod08g1716 KNOX2 1.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1716 - - cam:101494477 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1716 08 40769713 40775060 Dod08g1716 08 40769713 40775060 ECH