Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1680 ATGGGTTGGAAGAAGAAGAGAAGGGTATGGCTGGGTACATATGAGACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCAGCCATCATGATGAATGGTCAAATGGCCAAGACCAACTTCCCTATACCAAGGAACCAACCTGAAGATGCCACCCCTGGTGGCAATAACAAAGCATTTTCTGAGCTGCTGAACACGAAGCTCAGAAAGTGCTTCAAAGGGCGATCTCAGTCGCTCACTTGTCTGAGGCTAGATGCCGACAATTCTCACATTGGAGTGTGGCAAAAAGGAGCAGGACCACAAGAAGACTCCAATTGGATTATAAAGGTAGAGCTTGGGAAGAAATTACGTGAAGTGGGTGAATCAAGTGTGTCATCAGCAGGATGCCCACCACACACCATTGGTGGTGATGCTGGAAATGGGTTTGATGAAGAGGATAGAGTTGCGATGCAGATGGTTGAAGAGCTTCTTAATTGGAACTATCCTCGCGGTTCAATTAACCTTGAAGAACAAAGCCTAAAGGAACCTTTCTTACGGTAG 537 0.4674 MGWKKKRRVWLGTYETAEAAARAYDQAAIMMNGQMAKTNFPIPRNQPEDATPGGNNKAFSELLNTKLRKCFKGRSQSLTCLRLDADNSHIGVWQKGAGPQEDSNWIIKVELGKKLREVGESSVSSAGCPPHTIGGDAGNGFDEEDRVAMQMVEELLNWNYPRGSINLEEQSLKEPFLR* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1680 178 Pfam AP2 domain 4 33 IPR001471 GO:0003700|GO:0006355
Dod08g1680 178 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 164 - -
Dod08g1680 178 SUPERFAMILY DNA-binding domain 4 42 IPR016177 GO:0003677
Dod08g1680 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 6 164 - -
Dod08g1680 178 ProSiteProfiles AP2/ERF domain profile. 1 41 IPR001471 GO:0003700|GO:0006355
Dod08g1680 178 Gene3D AP2/ERF domain 2 42 IPR036955 GO:0003700|GO:0006355
Dod08g1680 178 SMART rav1_2 2 47 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1680 Dod-Chr8 39790857 39791592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1680 6 165 AP2-EREBP Transcription Factor Family AT5G25390 51.497 5.25e-47 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod08g1680 AP2 9.4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1680 - - lang:109326202 194.897