Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1650 ATGATGGGTAGAGGGGTGAGCTTCAACCCAGGAAATGGTGGAGCAGCTATCAAAGTCTTCTTCTGTGTCAGCATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAGGCTTCAGCCCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCTCCTGGAGGATTTCTTTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGGATTGTGCCTCCTGA 327 0.4557 MMGRGVSFNPGNGGAAIKVFFCVSMSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIEDCAS* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1650 108 Pfam LisH 34 60 IPR006594 GO:0005515
Dod08g1650 108 SMART Lish 32 64 IPR006594 GO:0005515
Dod08g1650 108 ProSiteProfiles LIS1 homology (LisH) motif profile. 32 64 IPR006594 GO:0005515
Dod08g1650 108 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 25 104 - -
Dod08g1650 108 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 25 104 IPR044716 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1650 Dod-Chr8 38934941 38937672 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Dod08g1650 LisH 7.8e-08 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1650 - - pvu:PHAVU_009G096600g 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1650 08 38934941 38937672 Dod08g1650 08 38934941 38937672 ECH
Dod08g1650 08 38934941 38937672 Dod09g0951 09 29460635 29469977 PCT