Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1637 ATGCGCGTTCTCTCGTCTCCAGAACTGTATATTGAAAGTACACCTGACACATATCCTTTGTTGATGGAGCGGTTGGGGAGCTCGAATGGCAATCAGCATATTATAGACATAACCGGAAGTGATGAAGCTTCCACTTCTGGCTCGACTCATGATAGACATTTTAATGGCGTAGATACATCATCACAGCATGAAGACAGAGTTAGTAGTGTAAGAGTACCTGTTTCTCAGCCTTCGGCATCAACCTCCAGTGTATCTAATGGATCAAATTCTAGGAATTCTTCATTCATGAGAAGAGGGGATTCGCGTCGGCATAGGAGTCCGGTGCATTCGGGCTTGTGGATATCCGTTGAGCTAGCACTCTTATTAAGCCAGATTGTTGCATCTATTGTTATTTTGTCTTTGTCAAGGCATGAGCATCCGCGCACCCCTTTGTTTGCATGGATTGTGGGTTATGCAACTGGATGTACTGCTACCCTCCCTCTGCTCTATTGGCGGTATTATCATCATAATCATATTCGAGAGCAAGATTCGTTGCAATCGCGGCAAACATCTCCTCGGATCAATGATCCTTCCGGGACATTTCTTTCCAGTTCTAGAACTAATGGAGGAGAAGATGGTCAGACTGCTGGTGCATTGTCCAGAAGCAATCAAGCTTCAACATTGATGAACAGAAGTAGAATGAAGACACTAGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAACGTATGGATCTTTGGGGGGCATTCGTCTGCCGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGGTGTTAGAGAGGATCTGTCACAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTCTGCCGACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGCGAAAGCAACTCAGCTGCTGCTGAAGGTGTTGTGGCTGCAGGAACTGAAAAGGAGCGTGTGATATCTGGGGAAGATGCGGTTTGCTGCATCTGCCTAGCAAAGTACGAAAACAATGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGACTGCATAGACAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACGTAACTGGAGAAGATGCCAGCCAACAACAGGGTGAGAGCAGGCTTGAGAATGGCATCATCAGTGCCAGAGTTTAA 1308 0.4396 MRVLSSPELYIESTPDTYPLLMERLGSSNGNQHIIDITGSDEASTSGSTHDRHFNGVDTSSQHEDRVSSVRVPVSQPSASTSSVSNGSNSRNSSFMRRGDSRRHRSPVHSGLWISVELALLLSQIVASIVILSLSRHEHPRTPLFAWIVGYATGCTATLPLLYWRYYHHNHIREQDSLQSRQTSPRINDPSGTFLSSSRTNGGEDGQTAGALSRSNQASTLMNRSRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPTYKFKMKKNKRSGESNSAAAEGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCIDKWLKINALCPLCKSEVGENVTGEDASQQQGESRLENGIISARV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1637 435 MobiDBLite consensus disorder prediction 414 435 - -
Dod08g1637 435 SUPERFAMILY RING/U-box 355 411 - -
Dod08g1637 435 MobiDBLite consensus disorder prediction 32 95 - -
Dod08g1637 435 SMART ring_2 364 404 IPR001841 -
Dod08g1637 435 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Dod08g1637 435 MobiDBLite consensus disorder prediction 32 106 - -
Dod08g1637 435 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 22 427 - -
Dod08g1637 435 MobiDBLite consensus disorder prediction 177 212 - -
Dod08g1637 435 CDD RING-H2_RNF111_like 363 405 - -
Dod08g1637 435 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 22 427 - -
Dod08g1637 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 410 IPR013083 -
Dod08g1637 435 Pfam Ring finger domain 364 405 IPR001841 -
Dod08g1637 435 MobiDBLite consensus disorder prediction 175 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1637 Dod-Chr8 38522477 38531589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1637 16 411 C3H Transcription Factor Family AT1G80400 51.250 8.35e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1637 - - gmx:100778728 675.626