Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1620 ATGAGGGCACGGAAGAAGAGCGGGGGTAGGGTTTCTGAGGATTCGGATGAATTGGTTCGGGTCCCGTTGCAGGCCATCCTCTTAGCTGATAGCTTCAACACCAAGTTCAGGCCTATCACCCTCGAACGCCCCAAAGTGCTGTTGCCACTGGTTACTGTTCCGATGATAAATTACACGTTGGCGTGGCTCGAATCCGCTGGCGTCGAAGAGGTTTTTGTTTTCTGCTGTGCTCATTCCAAACAGGTCATTAGCTATTTGGATAAATCTGGCTGGTCTCAACCTAATTTCGCCGTAACAACCATCGAGTCTCATAATTCTGTTAGCGCAGGAGATGCCCTGCGCCTGATATACGAGCGCAATGTGATACATGGAGACTTTGTCCTTATCAGCGGGGATACCGTAAGCAACATGTCGCTTACTCAGGCACTTCAAGAGCATAAAGAGAGGAGGAAGAAAGATAGTAACGCTGTGATGACCATGGTCATTAAGCGGTCAAAACCTAATCCGGTTGTCCGTCAGTCTCGACTCGGTACTGATGAACTTTTCATGGCCATTGATCCTAGAAGCAATCAACTTTTGTATTATGAGGAGATGGCAGACCATTCAAAAGGAATCTTACATCTTGACAAGTCATTGCTTGCTGACAACCCTTCCCTCTCTCTGCACCATGACAAGCAGGATTGTTACATTGACCTCTGCTCACCGGAAGTCCTTAGCCTATTTACAGACAATTTTGACTACCAACATCTACGGCGACATTTTGTCAAGGGATTGCTTGTTGATGATATAATGGGGTACAAAATTTTTGTTCATGAAATCCACTCAAACTATGCTGCAAGGATTGATAATTTTCGAAGCTATGACACTGTTAGCAGGGATATAATTCATAGATGGACATATCCACTGGTGCCAGATGTTATGAATTATGGCAATACAGCTCCTAAAGTTGAACGACAAGGAATGTATTGTGCTTCAGAAATATCGCAATCACAAACTGCCGTTATTGGCCCATTCACTGTTATAGGATTTGGCACCAAAATTGGCAATAACACTAAAATTTCAAATTCCGTTATTGGAGAAGGATGTACAATTGGATCAGATGTTCACATAGAGGGATGCTACATATGGGACAACGTCAGCATAGGAGATGACTGTAAACTCAGACATGCAATTGTGTGTGATGGGGTGACTATGAAGTCAGGAGCTGTTTTGGAACCTGGTGTTATTTTGTCTTTCAAGGTTGTAGTTGGGCAGGAGTTTGTTGTTCCTCCTTATTCATACGTATCTCTATTACAGCAGCCAGTTGAGGAAGATAGTGATGAAGAGCTTGAATATGCTGATAGTACTAGTGCCATCACAAGCAAAGTGGATAAGTCAGATGAAGAGATTGCATCCCAAGTATTGGGGAGACAATTTAGCGCTGCTTCGGGGCTAGGTACGGGTGGGGTTGGTTACATTTGGCCTAAATGTGAAGGAGGCCAAGAAGAAGAGTGGAGGCATTCAGTGGCGCCTATTCCTCTAGATAAAATTTCTGAGGCATTGAAAACTATGGAAGATGATCTGGAGTTAACTCAGGATGGCAGTATTCTCCCACCCTCTGGAGAGCTGAAACCTGATTCTGATGAGGATGATAATGAAGATGCTAGAGATGAATCTTATTACTTTGAGAAAGAGGTTGAAGCAACTTTTCTCCGGGCTGTGCATGAAAACATAAAAGACGACCATTTGATCTTAGAAGTTAACTCTTTGAAGTTGTCATGCAATAAGCTAACTGCTGATTGTGCGGGAGCTGTATTTTATGCTATGATGAAGTATGCTTTAGACACACCCCATAGTTCAACTGATAGCTTGATTCAGAATGTTCAGGTTGTACTTACAAAATGGAAAAAGGTTCTTATGTCCTATCTGACTGACATAGATGAGCAGATTGAAATCATACTAAAATTTGAAGAAATGTGTTTGGAATCTGCCAAGGAGTTTGCTCCATTGTTCACAAGGATTTTGCACTACATGTATGATGAAGGTATTGTAGAAGAAGATGCTATTTTAAGTTGGGAAGATGAGAAGAGATATGCAGATGAGGCAGATAAAGTTTTTGTTAAGCAGGCTCAAAAGTTAATTCAATGGCTAAAAGAGGCCCCTGAAGAAGATGATGACTAA 2160 0.4231 MRARKKSGGRVSEDSDELVRVPLQAILLADSFNTKFRPITLERPKVLLPLVTVPMINYTLAWLESAGVEEVFVFCCAHSKQVISYLDKSGWSQPNFAVTTIESHNSVSAGDALRLIYERNVIHGDFVLISGDTVSNMSLTQALQEHKERRKKDSNAVMTMVIKRSKPNPVVRQSRLGTDELFMAIDPRSNQLLYYEEMADHSKGILHLDKSLLADNPSLSLHHDKQDCYIDLCSPEVLSLFTDNFDYQHLRRHFVKGLLVDDIMGYKIFVHEIHSNYAARIDNFRSYDTVSRDIIHRWTYPLVPDVMNYGNTAPKVERQGMYCASEISQSQTAVIGPFTVIGFGTKIGNNTKISNSVIGEGCTIGSDVHIEGCYIWDNVSIGDDCKLRHAIVCDGVTMKSGAVLEPGVILSFKVVVGQEFVVPPYSYVSLLQQPVEEDSDEELEYADSTSAITSKVDKSDEEIASQVLGRQFSAASGLGTGGVGYIWPKCEGGQEEEWRHSVAPIPLDKISEALKTMEDDLELTQDGSILPPSGELKPDSDEDDNEDARDESYYFEKEVEATFLRAVHENIKDDHLILEVNSLKLSCNKLTADCAGAVFYAMMKYALDTPHSSTDSLIQNVQVVLTKWKKVLMSYLTDIDEQIEIILKFEEMCLESAKEFAPLFTRILHYMYDEGIVEEDAILSWEDEKRYADEADKVFVKQAQKLIQWLKEAPEEDDD* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1620 719 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 719 - -
Dod08g1620 719 Pfam Nucleotidyl transferase 25 164 IPR005835 GO:0009058|GO:0016779
Dod08g1620 719 CDD LbH_eIF2B_epsilon 340 418 - -
Dod08g1620 719 CDD W2_eIF2B_epsilon 550 718 IPR044123 GO:0005085|GO:0031369
Dod08g1620 719 Gene3D - 542 719 - -
Dod08g1620 719 SUPERFAMILY Trimeric LpxA-like enzymes 267 428 IPR011004 -
Dod08g1620 719 ProSiteProfiles W2 domain profile. 549 719 IPR003307 GO:0005515
Dod08g1620 719 SUPERFAMILY ARM repeat 555 713 IPR016024 -
Dod08g1620 719 CDD eIF-2B_epsilon_N 23 238 IPR035543 -
Dod08g1620 719 Gene3D Hexapeptide repeat proteins 316 457 - -
Dod08g1620 719 Pfam eIF4-gamma/eIF5/eIF2-epsilon 641 719 IPR003307 GO:0005515
Dod08g1620 719 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 12 302 IPR029044 -
Dod08g1620 719 SMART 542_3 629 716 IPR003307 GO:0005515
Dod08g1620 719 SUPERFAMILY Nucleotide-diphospho-sugar transferases 20 368 IPR029044 -
Dod08g1620 719 MobiDBLite consensus disorder prediction 523 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1620 Dod-Chr8 38043403 38052458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1620 1 713 Eukaryotic Initiation Factors Gene Family AT2G34970 63.209 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1620 K03240 - gmx:100784894 1212.21