Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1599 ATGGGAGGGCGAAGCTACTTTTGTGATTACTGCAATACGATGTTTAAAAACACACGAGCAAATCGAAAACAACATGAACAGAGCATTGAACACCAACAAGCTAAAGATCGTTGGTATGACTCCTTCAAACTTGAAGAAGCAGAAGAACAACAGCAGCAGCAACAACACCAACCACCACCACCACAACTTTTTCCTAACACACCACCATCTGAAGGATTTCCTAAACCCCTTTGTTACAACTTTATCAACACTGGGATTTGCTCTTACGGTGACTCTTGTGAGTATTTTCATCCTAGTGCCAATGATATACAACATCCAACAATATGCACACAACCAGTAATAAGCACACTTACTACACCAGGGAGTAGGATACGAGGTAATGTGAAGGGAACTTGGGATCATCTTCCTCCATCATTGCAACCTCCACCTGAGAATGGATATGATCCCCTTTCTTTTGTGGATTGGGGTTAG 471 0.4225 MGGRSYFCDYCNTMFKNTRANRKQHEQSIEHQQAKDRWYDSFKLEEAEEQQQQQQHQPPPPQLFPNTPPSEGFPKPLCYNFINTGICSYGDSCEYFHPSANDIQHPTICTQPVISTLTTPGSRIRGNVKGTWDHLPPSLQPPPENGYDPLSFVDWG* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1599 156 MobiDBLite consensus disorder prediction 134 156 - -
Dod08g1599 156 Gene3D - 66 128 - -
Dod08g1599 156 Pfam U1 zinc finger 5 39 IPR013085 GO:0008270
Dod08g1599 156 Coils Coil 15 35 - -
Dod08g1599 156 PANTHER NUCLEASE-RELATED 1 156 - -
Dod08g1599 156 SUPERFAMILY CCCH zinc finger 75 98 IPR036855 GO:0046872
Dod08g1599 156 SUPERFAMILY beta-beta-alpha zinc fingers 4 51 IPR036236 -
Dod08g1599 156 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Dod08g1599 156 MobiDBLite consensus disorder prediction 46 71 - -
Dod08g1599 156 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 75 98 IPR000571 GO:0046872
Dod08g1599 156 ProSiteProfiles Zinc finger C3H1-type profile. 72 100 IPR000571 GO:0046872
Dod08g1599 156 Gene3D Classic Zinc Finger 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1599 Dod-Chr8 37201520 37202324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1599 78 130 C2H2 Transcription Factor Family AT2G32930 39.623 4.06e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod08g1599 zf-U1 6.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1599 K13152 - ming:122068774 130.568