Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1597 ATGTTTTCCAGCTCCCAATTCGACGGCACCTCCGCCTTCTCCGGCGGCGGTTTCATGGCCTCCCAATCCACCAACCTCAACGATTCATCCCCCGCTCCCGCAAAAAGCCGCGATACTCAGGGTTTGATTCCGGTGACAGTGAAGCAGATAAGTGAAGCCTCTCATTCTGGTGATGAAAAGTCCAATTTTGTGATCAACGGTGTTGATGTCAACAATGTAACCTTGGTTGGAATGGTGTATGAGAAAGTTGAGAGAAACACTGATGTTAATTTTATTTTAGATGATGGAACGGGGCGAATCAAATGTCGAAGATGGGTCAATGAGACTTTTGACACAAAGGAAATGGAAGAAATACGGGATGGTATGTACGTTCGCATTTTTGGGCATCTGAAAAGCTTTCAAGGTGTAAGGCAACTCGTAGCCTTCTCTGTAAGGCCTGTGGCAAATTTTGACGAGATCTCATTTCACTTTATTGATTGCATACATAACCACCTCCGCACCAAAGTGGAAGGAATCACATCTGCAAATCCTCCGTCTGACTCATCTTTGAACACTCCTGTCAGAAATGCATCTAATGGAAATCAGGCACCATCATCAAATTCAGGATATGCACAATATAGCGTGGATGGACTCAAGGATTGTGATAAATTGGTTATTGGCTATCTGCAACAGCATTCAGACATGGAAGATGAACGGGGAATACATGTTAATGAACTATCTCGAGAACTTAAGCTTCCATTGGACAAGATCATGTTGTCGCTAAAGACTCTTGGAGATGACGGTTTAGTATACTCCACCATAGATGACTTCCATTACAAACAAGCTTGA 828 0.4348 MFSSSQFDGTSAFSGGGFMASQSTNLNDSSPAPAKSRDTQGLIPVTVKQISEASHSGDEKSNFVINGVDVNNVTLVGMVYEKVERNTDVNFILDDGTGRIKCRRWVNETFDTKEMEEIRDGMYVRIFGHLKSFQGVRQLVAFSVRPVANFDEISFHFIDCIHNHLRTKVEGITSANPPSDSSLNTPVRNASNGNQAPSSNSGYAQYSVDGLKDCDKLVIGYLQQHSDMEDERGIHVNELSRELKLPLDKIMLSLKTLGDDGLVYSTIDDFHYKQA* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1597 275 Gene3D - 34 168 IPR012340 -
Dod08g1597 275 Gene3D - 205 275 IPR036388 -
Dod08g1597 275 MobiDBLite consensus disorder prediction 21 41 - -
Dod08g1597 275 PANTHER REPLICATION PROTEIN A-RELATED 1 275 IPR040260 -
Dod08g1597 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
Dod08g1597 275 CDD RPA2_DBD_D 72 165 - -
Dod08g1597 275 SUPERFAMILY Nucleic acid-binding proteins 42 166 IPR012340 -
Dod08g1597 275 MobiDBLite consensus disorder prediction 172 202 - -
Dod08g1597 275 Pfam OB-fold nucleic acid binding domain 73 145 IPR004365 GO:0003676
Dod08g1597 275 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Dod08g1597 275 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 275 - -
Dod08g1597 275 Pfam Replication protein A C terminal 181 269 IPR014892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1597 Dod-Chr8 37158984 37163547 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1597 1 273 Core DNA Replication Machinery Family AT2G24490 48.936 7.79e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1597 K10739 - gmx:100802512 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1597 08 37158984 37163547 Dod08g1597 08 37158984 37163547 ECH