Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1587 ATGTATTACAAGAAGTTGGTTTATGATGGTGGAGAGTTTGAAGTTGGTGATGATGTTTATGTGAATAGGATGGAAGATTCTAGCTCAGATGATGATGAAGAACCCGAAATGGAGGAGTGTAGGGTGTGCTTTGATTCTGGGAGTGAGGTTATGGTTGAGTGTGATGATTGCTTGGGAGGGTTTCATTTGAAATGCTTGAAGTCGCCGCTGAAGGAGATTCCAGAAGGGGATTGGGTTTGTGGGTTCTGTGAGACTCTGAAGATTGGTAGGGATGTTAGCTTCCCGAAGCCATCGGAGGGTAAGAAAATGGTTGCTAGGACGATGAAACAGAAGCTTTTTCTAGTGATTTATGGGCTGCTCATGGAAACTGTCATCAGACATTGCTTTGTCATGATCCCCAAAGACTATGCTAAGGCCAATGAGGGAGATGATTTTTTCTTATGTGAATACAAATATGACATACATTGGCACAGTTTCAAACGTCTTGCTGATATTGACAATGAACAAGGGGCTAATAGTGATAAAGATTGGAACCTCTCTAAAGAATTAGACTCTGATACAGATGAAGATTATAAATATGAAGAAGAGAATATTAAAAATGCAAAATGTCAGCCATCAGTTAGCTGCAGTCAGTTCTTTGGACTTTGGAGGATAGGTACAAAAAGAATTCCAAAGCATGTAAGGTCTCACAAACATACTAATCTTGAGAGAGCAAAGGCTACACTGTTATTAGCATCATTGCCTACATGTTTACATTGTAGAAATAAAGAAATGGAGGAGGTGACTATATTCATTAAACGTGCGATTGGTGATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCAGGAACTAGCAAGGTCATATATGAGGCATTAAATGGACAGAGGGTCAGCTGGAAAAAGGCTCTGTATTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACTGGGAAAAAGGCTGACCGGCCATGTATTTTGCTTATTGATGAGCTTGATCTTCTTGTCGCAGCAATCTCAGGAGATGCACGTTGTGCTTTGGAGATATGCAGACGTGCAGCTAAAATAGCAGATTATCGTATGAAGAAGCTAATTGCAAATCCTGATTCTGTTGCAACAGGAAAAGCACTTGTTTGTATGGCTAATGTTGAAGCAGCTTTTCAAGAAATATTCCGGGCATTTCATATTCAAGTGATAAAAAGTTATTCCAGACTTAACAAGATTTTCCTAACAGCTATGGTGCATGAGCTTTATAAATCAGGAATGAGGGAAACCACTTTTGAGAAGTTGGCGATGACAGTTTCGTGTCTCTGTACCAGTAACGGTGAAATGTTTCTTGGATATGATACTCTTCTGCAAGTTGGGTGCCAAGCACAAGCTGCAAAAATTGCAGCTCAATTTCCCGAGCTGGAGAAGATCGAAGATTGTATTGGATTCATAAAGTCAAGGCCTTAA 1461 0.4011 MYYKKLVYDGGEFEVGDDVYVNRMEDSSSDDDEEPEMEECRVCFDSGSEVMVECDDCLGGFHLKCLKSPLKEIPEGDWVCGFCETLKIGRDVSFPKPSEGKKMVARTMKQKLFLVIYGLLMETVIRHCFVMIPKDYAKANEGDDFFLCEYKYDIHWHSFKRLADIDNEQGANSDKDWNLSKELDSDTDEDYKYEEENIKNAKCQPSVSCSQFFGLWRIGTKRIPKHVRSHKHTNLERAKATLLLASLPTCLHCRNKEMEEVTIFIKRAIGDDQCLGRCLYIHGVPGTSKVIYEALNGQRVSWKKALYLLNERFVEGKKTGKKADRPCILLIDELDLLVAAISGDARCALEICRRAAKIADYRMKKLIANPDSVATGKALVCMANVEAAFQEIFRAFHIQVIKSYSRLNKIFLTAMVHELYKSGMRETTFEKLAMTVSCLCTSNGEMFLGYDTLLQVGCQAQAAKIAAQFPELEKIEDCIGFIKSRP* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1587 486 ProSitePatterns Zinc finger PHD-type signature. 40 83 IPR019786 -
Dod08g1587 486 SUPERFAMILY FYVE/PHD zinc finger 24 86 IPR011011 -
Dod08g1587 486 Gene3D - 337 395 - -
Dod08g1587 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 92 IPR013083 -
Dod08g1587 486 ProSiteProfiles Zinc finger PHD-type profile. 37 86 IPR019787 -
Dod08g1587 486 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 338 465 IPR020793 -
Dod08g1587 486 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 2 112 IPR020793 -
Dod08g1587 486 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 289 338 IPR020793 -
Dod08g1587 486 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 121 289 IPR020793 -
Dod08g1587 486 SMART PHD_3 39 84 IPR001965 -
Dod08g1587 486 Gene3D - 231 291 IPR027417 -
Dod08g1587 486 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 338 465 - -
Dod08g1587 486 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 2 112 - -
Dod08g1587 486 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 289 338 - -
Dod08g1587 486 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 121 289 - -
Dod08g1587 486 Gene3D - 117 213 IPR043151 -
Dod08g1587 486 Pfam PHD-finger 40 84 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1587 Dod-Chr8 36774914 36785408 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1587 338 466 Core DNA Replication Machinery Family AT4G14700 58.915 1.98e-41 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dod08g1587 PHD 1.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1587 K02603 - gmx:100798547 464.922