LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod08g1578	ATGTCCCGTGTTTATGTTGGTAACCTTGATTCAAGAGTGACTGAGAGGGACCTTGAAGACGAGTTCCGTGTTTTCGGTGTTATTCGGAGTGTTTGGGTTGCAAGGAGGCCACCTGGATATGCTTTTATTGACTTTGATGACAGTAGAGATGCACGAGATGCTATTCGCGAATTGGATGGCAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAGGGGTGGAGGTGGTGGTCGTGGAGGTGGTCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGCTACGAGTGTGGTGAACCCGGTCATTTTGCTCGTGAGTGTCGCCTGCGTGGCGGTTCAGGAAGACGACGTAGCCGCAGTCCACCCCGGTTTCGTAGGAGCCCAAGTTATGGTCGTAGAAGTTACAGTCCCCGTGGAAGGTCCCCCCGGCGCCGCAGTATGTCACCTCGTGGACGCAGCTACAGCCGGTCACCTCCTTACCGTGCGCGTGAGGAGCTACCTTATGCTAATGGAAATGGCATTAGGGAACGACGCCGAAGCAGAAGTTGA	546	0.533	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDARDAIRELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSMSPRGRSYSRSPPYRAREELPYANGNGIRERRRSRS*	182

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod08g1578	181	Gene3D	-	1	73	IPR012677	-
	Dod08g1578	181	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	173	-	-
	Dod08g1578	181	ProSiteProfiles	Zinc finger CCHC-type profile.	92	107	IPR001878	GO:0003676\|GO:0008270
	Dod08g1578	181	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Dod08g1578	181	SMART	c2hcfinal6	92	108	IPR001878	GO:0003676\|GO:0008270
	Dod08g1578	181	MobiDBLite	consensus disorder prediction	105	181	-	-
	Dod08g1578	181	Gene3D	-	87	149	-	-
	Dod08g1578	181	MobiDBLite	consensus disorder prediction	66	91	-	-
	Dod08g1578	181	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	173	-	-
	Dod08g1578	181	SUPERFAMILY	RNA-binding domain, RBD	3	87	IPR035979	GO:0003676
	Dod08g1578	181	SUPERFAMILY	Retrovirus zinc finger-like domains	85	108	IPR036875	GO:0003676\|GO:0008270
	Dod08g1578	181	Pfam	Zinc knuckle	92	107	IPR001878	GO:0003676\|GO:0008270
	Dod08g1578	181	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Dod08g1578	181	CDD	RRM_SRSF3_like	3	71	-	-
	Dod08g1578	181	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod08g1578	Dod-Chr8	36286267	36292140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod08g1578	2	60	Eukaryotic Initiation Factors Gene Family	AT2G36660	39.683	2.51e-06	45.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod08g1578	K12896		-	cit:102606969	237.654